Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03804 and RBAM_023860
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:08
# Commandline: needle
# -asequence dna-align/BSNT_03804___holA.1.9828.seq
# -bsequence dna-align/RBAM_023860___holA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03804___holA-RBAM_023860___holA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03804___holA-RBAM_023860___holA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03804___holA
# 2: RBAM_023860___holA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1066
# Identity: 809/1066 (75.9%)
# Similarity: 809/1066 (75.9%)
# Gaps: 65/1066 ( 6.1%)
# Score: 3103.5
#
#
#=======================================
BSNT_03804___ 1 ATGGTATTTGATGTGTGGAAAAGCCTGAAAAAAGGAGATGTCC-ATCCAG 49
||||||||||||||.||||||..||||||||||||.||||||| .||| |
RBAM_023860__ 1 ATGGTATTTGATGTTTGGAAAGCCCTGAAAAAAGGGGATGTCCGCTCC-G 49
BSNT_03804___ 50 TTTATTGTTTATACGGAAAAGAGACATATCTGCTGCAAGAAACCGTCAGC 99
|||||||.||||||||||||||.||.||||||||.||||||||.||||||
RBAM_023860__ 50 TTTATTGCTTATACGGAAAAGAAACGTATCTGCTCCAAGAAACTGTCAGC 99
BSNT_03804___ 100 AGGATCAGACAGACGGTCGTTGATCAGGAGACAAAGGATTTCAATCTATC 149
.||||||||||..|.|||||||||.||||||||||||||||.||.||.||
RBAM_023860__ 100 CGGATCAGACAAGCTGTCGTTGATGAGGAGACAAAGGATTTTAACCTGTC 149
BSNT_03804___ 150 CGTTTTTGATCTGGAAGAGGACCCGCTGGATCAAGCGATTGCAGATGCTG 199
.|||||||||||.|||||.||.|||||.||.||.||..|..|.|||||.|
RBAM_023860__ 150 TGTTTTTGATCTTGAAGAAGATCCGCTTGACCAGGCCGTAACCGATGCGG 199
BSNT_03804___ 200 AAACGTTTCCGTTTATGGGGGAGCGGCGTCTTGTCATTGTGAAAAATCCA 249
|||||||||||||||||||.|||..|||.||.|||||.||.||||||||.
RBAM_023860__ 200 AAACGTTTCCGTTTATGGGAGAGAAGCGGCTGGTCATCGTAAAAAATCCG 249
BSNT_03804___ 250 TATTTTTTAACAGGTGAAAAGAAAAAAGAAAAAATTGAGCACAACGT-CA 298
|.||||||||||||.|||||.||.|||||||||||.|||||.|| | ||
RBAM_023860__ 250 TCTTTTTTAACAGGGGAAAAAAAGAAAGAAAAAATAGAGCATAA--TACA 297
BSNT_03804___ 299 G-TGCGCTTGAATCATATATACAATCA-CCTGCGCCTTACACAGTCTTTG 346
| .||.||.||..|.|||.| .||..| |||||||||||.||.|||||||
RBAM_023860__ 298 GCCGCTCTGGAGACTTATCT-GAAGGAGCCTGCGCCTTATACGGTCTTTG 346
BSNT_03804___ 347 TCCTGCTTGCTCCGTATGAAAAGCTTGATGAGCGAAAAAAGCTGACGAAA 396
|..|..|.||||||||.||.|||||.||.||.||.|||||||||||||||
RBAM_023860__ 347 TGATTGTGGCTCCGTACGAGAAGCTGGACGAACGGAAAAAGCTGACGAAA 396
BSNT_03804___ 397 GCGTTAAAG----AAGCACGCGTTTATGATGGAGGCGAAGGAATTAAATG 442
|||.|.||| ||||.| |||||||.||.||.|||||..|.||||
RBAM_023860__ 397 GCGCTGAAGCAAAAAGCCC----TTATGATTGAAGCTAAGGAGCTGAATG 442
BSNT_03804___ 443 CAAAGGAAACGACAGACTTTACTGTCAACCTTGCAAAAACAGAGCAGAAA 492
|||||||.|||||.||.|||||..|.||.||.||.|||.|.||..|.|||
RBAM_023860__ 443 CAAAGGAGACGACTGATTTTACGATTAATCTGGCGAAATCCGAAAATAAA 492
BSNT_03804___ 493 ACAATCGGCACGGAAGCGGCGGAGCATTTGGTTCTGCTTGTGAACGGTCA 542
|..||||..||.|||||.||.|||||||||||||||||||..|||||.||
RBAM_023860__ 493 ATGATCGATACAGAAGCTGCCGAGCATTTGGTTCTGCTTGCAAACGGCCA 542
BSNT_03804___ 543 TCTGTCATCGATTTTTCAGGAGATTCAAAAGCTCTGCACGTTTATTGGAG 592
|||||||||.||.|.||||||.||.|||||.||||.|.|.|..|..||.|
RBAM_023860__ 543 TCTGTCATCCATATATCAGGAAATACAAAAACTCTCCGCCTACACCGGTG 592
BSNT_03804___ 593 ATCGTGAAGAAATTACGCTGGATGATGT-----AAAAATGCTTGTTGCTA 637
|..|..|.||.||.||.||.||.||||| | |||.||.||.|
RBAM_023860__ 593 ACAGACATGAGATCACACTTGAAGATGTCCGGGA-----GCTCGTCGCAA 637
BSNT_03804___ 638 GAAGCCTTGAACAAAATATTTTTGAGCTGATCAATAAAATCGTCAACCGA 687
||||..|.||.||.||||||||||||||||||||.||||||||.||||||
RBAM_023860__ 638 GAAGTTTGGAGCAGAATATTTTTGAGCTGATCAACAAAATCGTGAACCGA 687
BSNT_03804___ 688 AAACGAACAGAGAGTCTGCAAATTTTTTATGATTTGCTAAAACAAAATGA 737
|||||.||.||.|||||.|||||.|||||||||.|..||||||||||.||
RBAM_023860__ 688 AAACGGACGGAAAGTCTTCAAATATTTTATGATCTTTTAAAACAAAACGA 737
BSNT_03804___ 738 AGAACCGATCAAAATTATGGCGCTTATTTCGAATCAGTTCCGGCTGATTC 787
||||||||||||||||||||||||.||..|.||.||.|||||.||||||.
RBAM_023860__ 738 AGAACCGATCAAAATTATGGCGCTGATCGCCAACCAATTCCGTCTGATTA 787
BSNT_03804___ 788 TGCAGACGAAGTACTTCGCGGAACAGGGATACGGACAAAAACAAATCGCT 837
|||||||.|||||.||.||||.|||.||||||||.|||||.|||||||||
RBAM_023860__ 788 TGCAGACAAAGTATTTTGCGGGACAAGGATACGGCCAAAAGCAAATCGCT 837
BSNT_03804___ 838 TCTAATCTAAAAGTTCACCCATTTCGGGTAAAGCTGGCGATGGATCAAGC 887
||.||..||||.||.|||||.||.||||||||.||||||||||||||.||
RBAM_023860__ 838 TCCAACTTAAAGGTGCACCCCTTCCGGGTAAAACTGGCGATGGATCAGGC 887
BSNT_03804___ 888 AAGGCTTTTTTCAGAGGAGGAGCTCCGTTTAATTATTGAACAG-CTTGCC 936
.|||||||||||.||.||.|||||.||....|||||.||| || ||.||.
RBAM_023860__ 888 GAGGCTTTTTTCTGAAGAAGAGCTGCGGCGTATTATAGAA-AGACTCGCG 936
BSNT_03804___ 937 GTCATGGACTATGAGATGAAAACCGGGAAAAAGGACAAGCAGCTCCTGCT 986
||.|||||.|||||.||||||||.|||||||||||||||||||||.||||
RBAM_023860__ 937 GTGATGGATTATGAAATGAAAACGGGGAAAAAGGACAAGCAGCTCTTGCT 986
BSNT_03804___ 987 CGAACTGTTCCTTTTACAGCT-----GTTAAAAAGA---AATGAAAAAAA 1028
.|||||.||.||..|..|||| | || |||||
RBAM_023860__ 987 GGAACTCTTTCTCCTTGAGCTTCTCCG-------GACTGAATGA------ 1023
BSNT_03804___ 1029 CGATCCCCATTATTGA 1044
RBAM_023860__ 1023 ---------------- 1023
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