Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03799 and RBAM_023820

See Amino acid alignment / Visit BSNT_03799 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:07
# Commandline: needle
#    -asequence dna-align/BSNT_03799___yqxA.1.9828.seq
#    -bsequence dna-align/RBAM_023820___yqxA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03799___yqxA-RBAM_023820___yqxA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03799___yqxA-RBAM_023820___yqxA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03799___yqxA
# 2: RBAM_023820___yqxA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 346
# Identity:     250/346 (72.3%)
# Similarity:   250/346 (72.3%)
# Gaps:          14/346 ( 4.0%)
# Score: 867.5
# 
#
#=======================================

BSNT_03799___      1 TTGATTGCATAC---TTT---GGAAAATACTTACTGCTTGTCACGATCAT     44
                     .||||      |   |||   ||.||||.|.|.|||.|.|.||...||||
RBAM_023820__      1 ATGAT------CCGTTTTACCGGCAAATGCCTGCTGATCGCCATTGTCAT     44

BSNT_03799___     45 GTTTTTAGGCGTTCTGTTCGGCATGCAGCAGGCAAACAACGGGATGC-TG     93
                     ||||||.||||||.||||||||||||||||||||||||.|||.|||| ||
RBAM_023820__     45 GTTTTTCGGCGTTTTGTTCGGCATGCAGCAGGCAAACAGCGGAATGCTTG     94

BSNT_03799___     94 AGTATGAAAGGCTATCATGACCCTTCACTGAGGGGGGCGTTTACGCTCAC    143
                     | |||||||||.||..|.||.||.||..|.|..||.||.||.||||||..
RBAM_023820__     95 A-TATGAAAGGATACAAAGATCCCTCCTTAAAAGGAGCATTCACGCTCGG    143

BSNT_03799___    144 CGACGGAAAAGATAATGAAAAAGAAGCCTCAATCCTAGGAGAAACAGTCA    193
                     ||.||||.|||...|.|||||||||||.||.||..|.||..||||.||.|
RBAM_023820__    144 CGGCGGAGAAGGACAGGAAAAAGAAGCATCCATTTTGGGGCAAACCGTTA    193

BSNT_03799___    194 CGGCAAAAGATTTAGAAGAAAAACAAAAAGAGCTGGAAAAGGTGGAGACA    243
                     ||||.||||||.|.|||||||||||||||.||||||||.|||.|||.||.
RBAM_023820__    194 CGGCGAAAGATCTGGAAGAAAAACAAAAACAGCTGGAACAGGCGGAAACC    243

BSNT_03799___    244 TTCAATATGTTTTCAAAAGCCGGACAAGCGCTTTCGAACACCGTAACCAA    293
                     |||||..|||||||||||||||||.||.|.|||||.||.|||||.||..|
RBAM_023820__    244 TTCAACCTGTTTTCAAAAGCCGGAGAAACCCTTTCAAATACCGTGACGGA    293

BSNT_03799___    294 TACTGCCCAGTCAATGTATGAATGGATACGGGATATGAATCAATAA    339
                     ..|.||.|||.|.||||||||.|||.|...|.|..||||.|..||.
RBAM_023820__    294 CTCGGCGCAGGCGATGTATGAGTGGGTTTCGAAACTGAACCGTTAG    339


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