Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home
About
Genes
DNA alignment: BSNT_03786 and RBAM_023720

See Amino acid alignment / Visit BSNT_03786 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:06
# Commandline: needle
#    -asequence dna-align/BSNT_03786___yqeW.1.9828.seq
#    -bsequence dna-align/RBAM_023720___yqeW.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03786___yqeW-RBAM_023720___yqeW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03786___yqeW-RBAM_023720___yqeW.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03786___yqeW
# 2: RBAM_023720___yqeW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 951
# Identity:     695/951 (73.1%)
# Similarity:   695/951 (73.1%)
# Gaps:          42/951 ( 4.4%)
# Score: 2442.5
# 
#
#=======================================

BSNT_03786___      1 ------------ATGTTAATTCTGATTAGCTTTACTGCTCTTAT----AT     34
                                 |||   ||.||||||..||||||.||.|||||    .|
RBAM_023720__      1 GTGTTTCATTTGATG---ATACTGATTCTCTTTACCGCACTTATCCTGGT     47

BSNT_03786___     35 TATTCTTTCTCACAGGCATGAACATGCTTCGAAAAGGCTTAATTTCTATG     84
                     | ||.||.|||   ||.||||.|.||||..|..|.|||.|.||..|..|.
RBAM_023720__     48 T-TTTTTACTC---GGAATGAGCCTGCTCAGGCAGGGCCTGATCGCCTTA     93

BSNT_03786___     85 GCGTACTCAAAAATT--GAAGATCGTTTGCTTTTATTTACAGACCATCCG    132
                     .||||.|||||||||  |||||  |..||||.||||||||.|||||.||.
RBAM_023720__     94 ACGTATTCAAAAATTGAGAAGA--GCCTGCTCTTATTTACCGACCACCCT    141

BSNT_03786___    133 TTAAAAGCGTTTCTTATCAGCATTGTATTTACGGGGATACTTCAGAGCAG    182
                     ||.|||||.|||||.||.|||||.|||||.||.||..|.|||||||||||
RBAM_023720__    142 TTGAAAGCTTTTCTCATAAGCATCGTATTCACTGGTTTTCTTCAGAGCAG    191

BSNT_03786___    183 TTCAGCCTTTATGGTCATTGTCATCGGCTTTGTAAGTGCGGGCGTTCTTT    232
                     .||||||||.|||||||||||||||||||||||.||.||.||||.|.|.|
RBAM_023720__    192 CTCAGCCTTCATGGTCATTGTCATCGGCTTTGTCAGCGCAGGCGCTTTAT    241

BSNT_03786___    233 CTTTTAAGCGGACGATACCGATGATTCTGGGGACAAATGTTGGCTCTACT    282
                     |||||||.|||||.||.|||||||||||.||.||||||||.|||||.||.
RBAM_023720__    242 CTTTTAAACGGACCATTCCGATGATTCTCGGCACAAATGTCGGCTCCACG    291

BSNT_03786___    283 TTTACAACTGAATTTATTGCTATCAAAATGGATATTTTGATTTGGGTTCT    332
                     |||||.||.||.|||.|.||.||.||.||||||.|..|.||||||||.||
RBAM_023720__    292 TTTACGACGGAGTTTTTAGCCATAAAGATGGATGTGCTCATTTGGGTGCT    341

BSNT_03786___    333 TTTAATAGGAGGTTTATTGTTTTTTCTGACT-GGCAGGTATCCTTTGAAA    381
                     |||.||.|||||..|..|||||.|.|| .|| .|.|..|||||.||.|..
RBAM_023720__    342 TTTTATCGGAGGCCTTGTGTTTATCCT-CCTCCGTAAATATCCGTTCAGG    390

BSNT_03786___    382 CAGCTGGGAACAAGCTTCCTCGGACTGGGCATCATCTTCTTTTGCATCAG    431
                     |||.|.||.|.||||||||||||.||.|||||||||||.||||||||||.
RBAM_023720__    391 CAGATCGGCATAAGCTTCCTCGGTCTCGGCATCATCTTTTTTTGCATCAC    440

BSNT_03786___    432 CGGATTCAGCCACCTTGCCGGGCCGCTGAC-GAAGCTGAAAACGGGAGCC    480
                     ..|.|||||||..||.||||..|||||||| ||| .||||..|.||.||.
RBAM_023720__    441 ATGCTTCAGCCGGCTCGCCGTTCCGCTGACAGAA-ATGAAGGCAGGGGCG    489

BSNT_03786___    481 GACGTTCTATACCATGTTAACGATTCAAACTGGTCCGCTTTGCTCATCGG    530
                     ||.|||.|....|||||.||.|||||.|.||||||||||.|..|.|||||
RBAM_023720__    490 GAGGTTTTGCGACATGTGAATGATTCGAGCTGGTCCGCTCTTTTTATCGG    539

BSNT_03786___    531 CATGGTGTTAACTGCCATCATTCACTCCAGTTCTGTCTGTATCGGCATTT    580
                     .|||.|.||.||.||.||||||||.||.||.||.|||||.||||||||||
RBAM_023720__    540 TATGATATTGACGGCAATCATTCATTCAAGCTCCGTCTGCATCGGCATTT    589

BSNT_03786___    581 TGATGAGTTTTATGAATGAAGGGATTATCGG-ACTGACACAGGCGATGAG    629
                     ||||||||||||||||.||||||.|.||||| |.||| |||.|||.|.||
RBAM_023720__    590 TGATGAGTTTTATGAACGAAGGGGTGATCGGCATTGA-ACAAGCGGTCAG    638

BSNT_03786___    630 CGTCGTACTCGGATCAAATATCGGGACATGCATTACAGCTGTCATGGCTG    679
                     ||||||.||.|||||.|||||||||||||||.|.||.||.||||||||||
RBAM_023720__    639 CGTCGTTCTGGGATCTAATATCGGGACATGCGTCACGGCCGTCATGGCTG    688

BSNT_03786___    680 CTGTATCCGGTGGATATGCGGCGAAACAGACAGCGTATGCGCATGTGGTA    729
                     ||||.||.||.||.|||||.||.|.||||||.||...|||.||.||.||.
RBAM_023720__    689 CTGTTTCAGGCGGTTATGCCGCCAGACAGACCGCCGGTGCTCACGTTGTG    738

BSNT_03786___    730 TTTAACGTGCTAGGGGTG--GCTCTAGTATTGCCTTTTCTGACCGCAGCG    777
                     |||||..|.||.||.|||  ||||  |||||.||.||.|||.|||||.|.
RBAM_023720__    739 TTTAATATTCTCGGCGTGCTGCTC--GTATTTCCCTTCCTGTCCGCATCA    786

BSNT_03786___    778 ACCGGCTTTGTAGAGCAGTTATCACCCGATCCTGCCCAAAGGATTGCTCA    827
                     .|.||.|||...||||...|.||....|||||.||.||.|.||||||.||
RBAM_023720__    787 GCAGGTTTTACGGAGCGCCTGTCTGATGATCCCGCGCAGATGATTGCGCA    836

BSNT_03786___    828 TTTCAGCCTTTTATTTAATGTAGTAACAGCTCTT-TTATTTCTTCCGCTT    876
                     |||||||||.||||||||.|||||.||.|| ||| ||.|||||.|||.|.
RBAM_023720__    837 TTTCAGCCTGTTATTTAACGTAGTCACCGC-CTTATTGTTTCTGCCGTTC    885

BSNT_03786___    877 ACAAACTTGTTTTACCGCTTGATTCACCTTCTTATCCCGGCTAAA---TA    923
                     |||.|.|||||||||||..|||||.||...||.||.||..|.|||   ||
RBAM_023720__    886 ACACATTTGTTTTACCGGCTGATTGACAGGCTGATTCCTCCGAAACCGTA    935

BSNT_03786___    924 A    924
                     |
RBAM_023720__    936 A    936


#---------------------------------------
#---------------------------------------
Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03786 and RBAM_023720

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
