Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_03782 and RBAM_023680

See Amino acid alignment / Visit BSNT_03782 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:05
# Commandline: needle
#    -asequence dna-align/BSNT_03782___yqfA.1.9828.seq
#    -bsequence dna-align/RBAM_023680___yqfA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03782___yqfA-RBAM_023680___yqfA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03782___yqfA-RBAM_023680___yqfA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03782___yqfA
# 2: RBAM_023680___yqfA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1000
# Identity:     792/1000 (79.2%)
# Similarity:   792/1000 (79.2%)
# Gaps:          11/1000 ( 1.1%)
# Score: 3138.0
# 
#
#=======================================

BSNT_03782___      1 ATGGATCCGTCAACACTTATGATTCTGGCAATTGTCGCAGTAGCGATCAT     50
                     |||||.|.|||||...|...||||.|.|||.|.||.||.|..||.||.||
RBAM_023680__      1 ATGGAACTGTCAAGTTTGGCGATTTTAGCATTAGTTGCTGCTGCCATTAT     50

BSNT_03782___     51 TGTTTTGGCAGTATTTTTTACATTTGTGCCTGTAATGCTTTGGATTTCAG    100
                     |||.||.||..||||.||.||.|||||.||.||.|||||.||||||||.|
RBAM_023680__     51 TGTGTTAGCCATATTCTTCACCTTTGTACCGGTGATGCTATGGATTTCGG    100

BSNT_03782___    101 CTTTGGCAGCCGGAGTGAAAATCAGCATTTTCACTCTAGTTGGGATGAGG    150
                     |..|.||.||.|||||.|.||||||||||||||||.|.||.|||||||||
RBAM_023680__    101 CGCTTGCGGCAGGAGTCAGAATCAGCATTTTCACTTTGGTCGGGATGAGG    150

BSNT_03782___    151 CTTCGCCGTGTCATTCCGAATCGGGTTGTTAACCCGCTGATTAAAGCCCA    200
                     ||.||.||.|||||.||.|..||.|||||.||.|||.|.||||||||.||
RBAM_023680__    151 CTGCGGCGCGTCATACCAAGCCGCGTTGTCAATCCGTTAATTAAAGCGCA    200

BSNT_03782___    201 TAAAGCGGGACTTAATGTTGG----AACAAACCAGCTTGAAAGCCACTAC    246
                     .|||||.||.|    |||..|    ||||||.|||||.||||||||.||.
RBAM_023680__    201 CAAAGCCGGCC----TGTCCGCAACAACAAATCAGCTCGAAAGCCATTAT    246

BSNT_03782___    247 CTGGCTGGAGGTAATGTTGACAGAGTCGTCAACGCGCTTATCGCCGCTCA    296
                     |||||.|||||||||||.|||||.||.|||||.||.||.||.||.||.||
RBAM_023680__    247 CTGGCCGGAGGTAATGTCGACAGGGTGGTCAATGCCCTGATTGCGGCACA    296

BSNT_03782___    297 GCGAGCTAACATTGAACTCACATTCGAGCGCTGTGCTGCCATTGATCTTG    346
                     |||.||.||.|||||.||..||||.||.|||||.||.||||||||.||.|
RBAM_023680__    297 GCGCGCCAATATTGAGCTGTCATTTGAACGCTGCGCAGCCATTGACCTGG    346

BSNT_03782___    347 CAGGCCGGGACGTGTTGGAAGCTGTTCAAATGAGCGTTAATCCTAAGGTG    396
                     |.||.||.|||||.||||||||.||.||.||||||||||||||.|||||.
RBAM_023680__    347 CCGGGCGTGACGTATTGGAAGCCGTACAGATGAGCGTTAATCCGAAGGTC    396

BSNT_03782___    397 ATTGAAACACCGTTCATTGCCGGTGTTGCAATGGACGGGATTGAAGTGAA    446
                     ||||||||||||||.||.||.|||||.||.||||||||.||||||||.||
RBAM_023680__    397 ATTGAAACACCGTTTATCGCGGGTGTCGCCATGGACGGAATTGAAGTAAA    446

BSNT_03782___    447 AGCGAAAGCGAGAATCACAGTAAGAGCGAATATCGAGCGCCTCGTCGGGG    496
                     |||.|||||.||||||||.||||||||.|||||.||||||||.|||||.|
RBAM_023680__    447 AGCAAAAGCCAGAATCACGGTAAGAGCCAATATTGAGCGCCTTGTCGGAG    496

BSNT_03782___    497 GAGCAGGGGAAGAAACCATTGTAGCTCGTGTAGGTGAGGGGATCGTTTCT    546
                     ||||.||.|||||.||..||||.||.|||||.||.||.|||||.||.||.
RBAM_023680__    497 GAGCGGGAGAAGAGACGGTTGTCGCCCGTGTCGGAGAAGGGATTGTCTCG    546

BSNT_03782___    547 ACAATCGGTTCATCTGATAATCATAAAAAAGTGCTTGAAAACCCTGACAT    596
                     |||||||||||.|||.|.|||||||||||||||||||||||||||||.||
RBAM_023680__    547 ACAATCGGTTCTTCTCACAATCATAAAAAAGTGCTTGAAAACCCTGATAT    596

BSNT_03782___    597 GATTTCTCAGACAGTCCTTGGAAAAGGATTGGACTCAGGAACTGCGTTTG    646
                     ||||||.|||||.||.|||||.|||||..||||.|||||.||.||.||||
RBAM_023680__    597 GATTTCGCAGACCGTACTTGGCAAAGGGCTGGATTCAGGCACCGCATTTG    646

BSNT_03782___    647 AAATTCTCTCAATTGATATTGCAGATGTAGATATCGGCAAAAACATCGGT    696
                     |||||||.||.|||||.||.||.||.||.||||||||||||||||||||.
RBAM_023680__    647 AAATTCTTTCGATTGACATCGCCGACGTTGATATCGGCAAAAACATCGGA    696

BSNT_03782___    697 GCAATTTTACAAACCGATCAGGCTGAGGCTGATAAAAACATCGCGCAGGC    746
                     ||.|||.|.||.||.||||||||.||.||.||.||||||||.||||||||
RBAM_023680__    697 GCGATTCTTCAGACGGATCAGGCAGAAGCAGACAAAAACATTGCGCAGGC    746

BSNT_03782___    747 AAAAGCGGAAGAACGACGTGCGATGGCTGTCGCTCAAGAACAGGAAATGC    796
                     .|||||.|||||.||.||.||.|||||.|||||.|||||.||||||||||
RBAM_023680__    747 CAAAGCCGAAGAGCGCCGCGCCATGGCGGTCGCCCAAGAGCAGGAAATGC    796

BSNT_03782___    797 GTGCCCGCGTAGAAGAAATGCGCGCGAAAGTAGTAGAAGCCGAGGCGGAA    846
                     |.||.|||||||||||||||||.||.|||||.||.|||||.||.||.|||
RBAM_023680__    797 GCGCTCGCGTAGAAGAAATGCGTGCAAAAGTCGTGGAAGCAGAAGCCGAA    846

BSNT_03782___    847 GTGCCGCTTGCGATGGCAGAAGCTTTGCGCGAAGGGAATATTGGCGTCAT    896
                     |||||||||||||||||||||||.|||||.|||||.||.||.||||||||
RBAM_023680__    847 GTGCCGCTTGCGATGGCAGAAGCGTTGCGTGAAGGAAACATCGGCGTCAT    896

BSNT_03782___    897 GGATTACATGAATATCAAGAATATCGATGCTGACACAGAAATGCGTGATT    946
                     |||.||.|||||.||.||.||||||||.||.||.||.||.|||.|.||||
RBAM_023680__    897 GGACTATATGAACATAAAAAATATCGACGCGGATACGGACATGAGGGATT    946

BSNT_03782___    947 CATTCGGCAAGCTGACGAAAGACCCTTCGGATGAAGACCGCAAATCATAA    996
                     |..||||||||||||||||.||||.....||||||||||   ||..||||
RBAM_023680__    947 CTATCGGCAAGCTGACGAATGACCAGCAAGATGAAGACC---AACAATAA    993


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.