Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03781 and RBAM_023670
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:05
# Commandline: needle
# -asequence dna-align/BSNT_03781___yqfB.1.9828.seq
# -bsequence dna-align/RBAM_023670___yqfB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03781___yqfB-RBAM_023670___yqfB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03781___yqfB-RBAM_023670___yqfB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03781___yqfB
# 2: RBAM_023670___yqfB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 488
# Identity: 277/488 (56.8%)
# Similarity: 277/488 (56.8%)
# Gaps: 121/488 (24.8%)
# Score: 698.5
#
#
#=======================================
BSNT_03781___ 1 ATGGA--AGATTTACTGACCAATCCGCTTATTATTGCAGCGATCATCGGA 48
|||.| ||||| |||||.||||||||..|.|||||.||..|||||||.
RBAM_023670__ 1 ATGCACGAGATT--CTGACAAATCCGCTCGTCATTGCCGCCGTCATCGGC 48
BSNT_03781___ 49 ATCATTTCTGCGATTTTCGGCAAAAAGAGCAAAGAAGAAAA--------- 89
||.||.||.||.||.||||||||.||.|.||||||.|||||
RBAM_023670__ 49 ATTATATCGGCAATATTCGGCAAGAAAAACAAAGATGAAAAACGTCCGCC 98
BSNT_03781___ 90 -------------GCAAAACAGCCAAAAAAG--------AAAAAAACCTC 118
|.|||.|||.|||||||| ||||.|.||.|
RBAM_023670__ 99 GGGTACACGTCCCGGAAATCAGGCAAAAAAGCAGGATCAAAAACAGCCGC 148
BSNT_03781___ 119 AACACGTGC--AATCTGCTTCTTCTCAAAAGAAGCAGTCAAAAGAAGATG 166
|..|.|.|| ||.|.| |||||.| ||||| .||
RBAM_023670__ 149 AGAAAGAGCATAAGCCG-------------GAAGCGG----AAGAA-TTG 180
BSNT_03781___ 167 CCCCTGCACCTATC----CCTAACCGTATGGAACAGGCAAGACGGGAAGC 212
|||| ||.|.|| ...||||.|.|.||.||...||||.|||||||
RBAM_023670__ 181 --CCTG-ACGTTTCAGAAGAGAACCCTTTTGAGCAAAAAAGAAGGGAAGC 227
BSNT_03781___ 213 GGAAGAAAGACGC--AG-GGAAAC--AGCAAGAAACCTG---AAAGGGCT 254
.|| |||| ||| || |||.|| ||| ||| || ||.|||.|
RBAM_023670__ 228 TGA--AAAG-CGCCTAGCGGAGACGGAGC-AGA----TGTTTAACGGGTT 269
BSNT_03781___ 255 GGAACGAGATCTTGCTGCTGCCAAACAAAAAACA---GTATACACAAAAC 301
.||||...| ||||.||..| .|| | |||.||||
RBAM_023670__ 270 CGAACATAA-------GCTGACATCC-----GCACGCG----CACGAAAC 303
BSNT_03781___ 302 ---------AAAAAATGCTTCAG--------GTGAATAAGGACACCGTCG 334
||.||| |||| .|.|||||.||.||.|..|
RBAM_023670__ 304 GCGTCTCTGAAGAAA----TCAGCCCTCAAAATAAATAAAGAAACTGCGG 349
BSNT_03781___ 335 TACAGGGAATCGTTCTAGGAGAGGTGTTCGGGCCTCCACGGGCGAAAAAA 384
|.||.||.||..|..|..|.|||||.||.||.||.||.||.||.||||||
RBAM_023670__ 350 TCCAAGGCATTATATTCAGTGAGGTTTTGGGTCCGCCCCGTGCAAAAAAA 399
BSNT_03781___ 385 CCTCACCGTACGATGCGCTCAGC--CCGTAAAAATTAA 420
||.|||||.||.||||| .|.| |.|||||||.|||
RBAM_023670__ 400 CCGCACCGGACCATGCG--GAACATCGGTAAAAAATAA 435
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