Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03779 and RBAM_023660

See Amino acid alignment / Visit BSNT_03779 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:05
# Commandline: needle
#    -asequence dna-align/BSNT_03779___yqfC.1.9828.seq
#    -bsequence dna-align/RBAM_023660___yqfC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03779___yqfC-RBAM_023660___yqfC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03779___yqfC-RBAM_023660___yqfC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03779___yqfC
# 2: RBAM_023660___yqfC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 283
# Identity:     243/283 (85.9%)
# Similarity:   243/283 (85.9%)
# Gaps:           2/283 ( 0.7%)
# Score: 1043.0
# 
#
#=======================================

BSNT_03779___      1 ATGGGGCAAAGAAAGAATCGTATGAAAGCTTGGCTGACAAGAGCATTGGA     50
                     |||||||||||||||||||||.|.||.||.||||||||||||||||||||
RBAM_023660__      1 ATGGGGCAAAGAAAGAATCGTGTAAAGGCATGGCTGACAAGAGCATTGGA     50

BSNT_03779___     51 AATTCCCCCGGACGTTATGATGGATCTGCCGAGGATTACAATGGTTGGCA    100
                     ||||||||||||||||||||||||||||||..|.|||||.|||||.||||
RBAM_023660__     51 AATTCCCCCGGACGTTATGATGGATCTGCCTCGTATTACGATGGTCGGCA    100

BSNT_03779___    101 GACTTCATATCTACATAGAAAACCACAGAGGCCTTTTGCTTTTCAGTG-A    149
                     |||||||||||||||||||.||.|||||||||||..||||.|||||.| |
RBAM_023660__    101 GACTTCATATCTACATAGAGAATCACAGAGGCCTCCTGCTGTTCAGCGAA    150

BSNT_03779___    150 GAATGAAGTGAGGCTGATGCTGAAGCAGGGCCAGTGCATCATATCTGGTA    199
                     ||| |||||.|||||||||||.||||||||.|||||.||||||||.||.|
RBAM_023660__    151 GAA-GAAGTCAGGCTGATGCTCAAGCAGGGGCAGTGTATCATATCAGGAA    199

BSNT_03779___    200 AAAATTTTGTCATCAAGGCGATTCTTCCGGAAGAGATACTTTTGGAGGGT    249
                     ||||.||.|||||.|||||.||.|||||.||.||.||.||||||||.||.
RBAM_023660__    200 AAAACTTGGTCATTAAGGCAATCCTTCCTGAGGAAATCCTTTTGGAAGGC    249

BSNT_03779___    250 ACGATTGATGTCGTTCGATATGTTGAGTCATAA    282
                     |||||.|||..|||.||||||||.||.||||||
RBAM_023660__    250 ACGATAGATCACGTACGATATGTCGATTCATAA    282


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