Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03758 and RBAM_023510
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:03
# Commandline: needle
# -asequence dna-align/BSNT_03758___sigA.1.9828.seq
# -bsequence dna-align/RBAM_023510___rpoD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03758___sigA-RBAM_023510___rpoD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03758___sigA-RBAM_023510___rpoD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03758___sigA
# 2: RBAM_023510___rpoD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1124
# Identity: 964/1124 (85.8%)
# Similarity: 964/1124 (85.8%)
# Gaps: 10/1124 ( 0.9%)
# Score: 4177.0
#
#
#=======================================
BSNT_03758___ 1 ATGGCTGATAAACAAACCCACGAGACAGAA-------TTAACATTCGACC 43
|||||||||||||||||||||||.|||||| || |||||.||||
RBAM_023510__ 1 ATGGCTGATAAACAAACCCACGAAACAGAAACAGAACTT-ACATTAGACC 49
BSNT_03758___ 44 AAGTAAAAGAGCAATTAACAGAGTCTGGTAAAAAACGTGGCGTTTTGACA 93
|.|||||||||||..|.||.||..||||.|||||||||||||||||.|||
RBAM_023510__ 50 AGGTAAAAGAGCAGCTTACTGAAACTGGAAAAAAACGTGGCGTTTTAACA 99
BSNT_03758___ 94 TATGAAGAAATTGCTGAGCGTATGTCCAGCTTTGAAATTGAATCAGACCA 143
|||||||||||||||||.||.|||||||||||||||||||||||||||||
RBAM_023510__ 100 TATGAAGAAATTGCTGAACGCATGTCCAGCTTTGAAATTGAATCAGACCA 149
BSNT_03758___ 144 AATGGATGAGTATTATGAATTTTTAGGTGAACAAGGTGTTGAATTAATTA 193
|||||||||||||||||||||||||||.||||||||||||||||||||||
RBAM_023510__ 150 AATGGATGAGTATTATGAATTTTTAGGAGAACAAGGTGTTGAATTAATTA 199
BSNT_03758___ 194 GTGAGAATGAAGAAACAGAAGATCCTAATATTCAGCAGCTTGCCAAAGCC 243
||||.|||||||||||.|||||||||||||||||.|||||||||||||||
RBAM_023510__ 200 GTGAAAATGAAGAAACGGAAGATCCTAATATTCAACAGCTTGCCAAAGCC 249
BSNT_03758___ 244 GAAGAAGAATTTGACCTTAATGACCTAAGTGTACCGCCTGGCGTTAAAAT 293
||||||||||||||||||||||||||.||.||||||||||||||.||.||
RBAM_023510__ 250 GAAGAAGAATTTGACCTTAATGACCTCAGCGTACCGCCTGGCGTAAAGAT 299
BSNT_03758___ 294 CAATGACCCAGTTCGTATGTATTTAAAGGAAATTGGTCGGGTTAACCTTC 343
||||||.|||||.||.|||||..|.||||||||.||.|||||.||.||||
RBAM_023510__ 300 CAATGATCCAGTCCGCATGTACCTTAAGGAAATCGGACGGGTAAATCTTC 349
BSNT_03758___ 344 TTTCTGCAAAAGAAGAAATCGCCTACGCTAAAAAGATTGAAGAAGGTGAC 393
|||||||.||||||||||||.||||||||.||||.||||||||.||||||
RBAM_023510__ 350 TTTCTGCTAAAGAAGAAATCACCTACGCTCAAAAAATTGAAGAGGGTGAC 399
BSNT_03758___ 394 GAAGAATCTAAACGCAGATTGGCTGAAGCGAACCTGCGGCTTGTTGTCAG 443
||.|||||||||||||||.||||||||||.|||||.||..|.||||||||
RBAM_023510__ 400 GAGGAATCTAAACGCAGACTGGCTGAAGCAAACCTTCGTTTAGTTGTCAG 449
BSNT_03758___ 444 TATCGCAAAACGGTATGTCGGACGCGGTATGCTGTTCCTTGATCTGATCC 493
.||.||.||||||||||||||.|||||.|||||.|||.|.||..||||||
RBAM_023510__ 450 CATTGCTAAACGGTATGTCGGCCGCGGCATGCTTTTCTTAGACTTGATCC 499
BSNT_03758___ 494 AGGAAGGAAACATGGGTCTGATGAAAGCCGTTGAAAAATTTGATTATCGC 543
|.|||||||||||||||||.|||||||||||.||.||.|||||.||.||.
RBAM_023510__ 500 AAGAAGGAAACATGGGTCTCATGAAAGCCGTCGAGAAGTTTGACTACCGT 549
BSNT_03758___ 544 AAAGGTTATAAATTCAGTACGTATGCTACGTGGTGGATCAGACAGGCGAT 593
|||||.||||||||||||||||||||.||.||||||||||||||||||||
RBAM_023510__ 550 AAAGGATATAAATTCAGTACGTATGCGACTTGGTGGATCAGACAGGCGAT 599
BSNT_03758___ 594 TACACGTGCCATTGCCGATCAGGCGAGAACGATCCGGATTCCCGTTCATA 643
||||||.|||||.||.||.|||||||||||.|||||.||.||.|||||.|
RBAM_023510__ 600 TACACGCGCCATCGCTGACCAGGCGAGAACAATCCGTATCCCGGTTCACA 649
BSNT_03758___ 644 TGGTTGAAACCATTAATAAATTAATCCGTGTGCAGCGTCAATTACTGCAA 693
||||.||||||||.||.|||||||||||.|||||||||||..|.||.||.
RBAM_023510__ 650 TGGTGGAAACCATCAACAAATTAATCCGGGTGCAGCGTCAGCTTCTTCAG 699
BSNT_03758___ 694 GA-CTTAGGCAGAGAACCAACACCTGAAGAAATTGCGGAAGATATGGATT 742
|| ||| ||||||||.||.|||||.|||||.|||||.|||||.||||||.
RBAM_023510__ 700 GATCTT-GGCAGAGAGCCGACACCGGAAGAGATTGCTGAAGACATGGATC 748
BSNT_03758___ 743 TAACGCCTGAAAAAGTACGCGAAATCTTAAAGATTGCTCAAGAGCCGGTA 792
|.||.|||||||||||.||.|||||.|||||.||||||||||||||.||.
RBAM_023510__ 749 TTACACCTGAAAAAGTCCGTGAAATATTAAAAATTGCTCAAGAGCCTGTT 798
BSNT_03758___ 793 TCTCTGGAAACACCGATCGGTGAAGAGGATGACTCGCACCTTGGTGATTT 842
|||.|.|||||.||||||||||||||.||.|||||.||.||.|||||.||
RBAM_023510__ 799 TCTTTAGAAACGCCGATCGGTGAAGAAGACGACTCACATCTCGGTGACTT 848
BSNT_03758___ 843 CATTGAAGACCAAGAAGCAACTTCACCTTCTGACCACGCCGCATACGAGC 892
|||.||||||||.|||||.||.||.||.||.||.||.||.|||||.||||
RBAM_023510__ 849 CATCGAAGACCAGGAAGCGACATCTCCGTCGGATCATGCGGCATATGAGC 898
BSNT_03758___ 893 TATTGAAAGAGCAGCTGGAAGATGTGCTTGATACGTTAACTGATCGTGAA 942
|.||.|||||.|||||||||||||||||.||||||||.||.|||||||||
RBAM_023510__ 899 TTTTAAAAGAACAGCTGGAAGATGTGCTGGATACGTTGACAGATCGTGAA 948
BSNT_03758___ 943 GAAAATGTATTGCGTCTTCGATTCGGTCTTGATGACGGCCGTACAAGAAC 992
|||||.||..|||||||.||.||||||||.||||||||.||.||||||||
RBAM_023510__ 949 GAAAACGTGCTGCGTCTCCGTTTCGGTCTGGATGACGGACGCACAAGAAC 998
BSNT_03758___ 993 ATTAGAAGAGGTCGGCAAAGTATTTGGAGTAACGAGAGAGCGTATTCGAC 1042
.||.|||||.||.||||||||.||||||||||||||||||||||||||.|
RBAM_023510__ 999 TTTGGAAGAAGTAGGCAAAGTGTTTGGAGTAACGAGAGAGCGTATTCGCC 1048
BSNT_03758___ 1043 AAATCGAAGCCAAAGCGTTGCGGAAACTAAGACATCCTAGCAGAAGTAAA 1092
||||.|||||.||||||.|.||.|||.|.||||||||.||||||||.|||
RBAM_023510__ 1049 AAATTGAAGCAAAAGCGCTTCGCAAATTGAGACATCCGAGCAGAAGCAAA 1098
BSNT_03758___ 1093 CGTTTGAAAGATTTCCTCGAATAA 1116
|||.||||.|||||.||||||||.
RBAM_023510__ 1099 CGTCTGAAGGATTTTCTCGAATAG 1122
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