Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03754 and RBAM_023490

See Amino acid alignment / Visit BSNT_03754 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:03
# Commandline: needle
#    -asequence dna-align/BSNT_03754___yqfN.1.9828.seq
#    -bsequence dna-align/RBAM_023490___yqfN.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03754___yqfN-RBAM_023490___yqfN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03754___yqfN-RBAM_023490___yqfN.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03754___yqfN
# 2: RBAM_023490___yqfN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 741
# Identity:     478/741 (64.5%)
# Similarity:   478/741 (64.5%)
# Gaps:         126/741 (17.0%)
# Score: 1636.5
# 
#
#=======================================

BSNT_03754___      0 --------------------------------------------------      0
                                                                       
RBAM_023490__      1 ATGAAGTTATCTAAAAGATTGCAGTCTGTGGCGGAATATATCCCTCCGGG     50

BSNT_03754___      1 -------ATGGCCGATATCGGCTCTGATCACGCATACCTTCCTTGTTATG     43
                            .|.||.||||||||.||.||.|||||.||.||||||||.||||
RBAM_023490__     51 TGCCCTGGTTGCTGATATCGGGTCGGACCACGCGTATCTTCCTTGCTATG    100

BSNT_03754___     44 CGGTGCTGAATCATAAAGCCAGCGGGGCGATTGCCGGAGAAATAACAGAC     93
                     |.||..||||||||...||.|||.||||.||.|||||.|||||.||||||
RBAM_023490__    101 CCGTTTTGAATCATTTGGCAAGCCGGGCAATCGCCGGTGAAATTACAGAC    150

BSNT_03754___     94 GGCCCATTTTTGTCTGCAAAGCGGCAGGTTGAAAAATCAGG-CTTAAACT    142
                     ||.||.|||.|.||.||.||.|.||||||.|||||| |.|| |||||   
RBAM_023490__    151 GGACCGTTTCTATCCGCCAAACAGCAGGTGGAAAAA-CTGGACTTAA---    196

BSNT_03754___    143 CGCAC----ATTTCTGTAAGGCAGGGAGACGGACTGGAAGTGATTAAAAA    188
                      ||||    ||.||.||||||.|.||.|||||.|||...||..||.||||
RBAM_023490__    197 -GCACTCTTATCTCCGTAAGGAAAGGTGACGGGCTGAGCGTCCTTGAAAA    245

BSNT_03754___    189 AGGTGAAGCTGATGCCATTACGATTGCCGGAATGGGCGGGGCTTTGATCG    238
                     |||.|||||.|..||||||||.||.|||||.||||||||.||..||||||
RBAM_023490__    246 AGGAGAAGCCGGCGCCATTACAATCGCCGGCATGGGCGGAGCGCTGATCG    295

BSNT_03754___    239 CTCACATTTTAGAAGCGGGCAAAGAC-AAATTAACGGGGAAGGAACGGCT    287
                     ||||.|||||.||..|.|| |||.|| |||||.||||||...||||||||
RBAM_023490__    296 CTCATATTTTGGAGTCCGG-AAAAACGAAATTGACGGGGCGTGAACGGCT    344

BSNT_03754___    288 CATTTTACAGCCGAATATTCATGCTGTTCATATCAGGGAATGGCTTTATA    337
                     .|||.|.|||||||||||||||||.||||||||.||.||.|||||.|||.
RBAM_023490__    345 GATTCTGCAGCCGAATATTCATGCCGTTCATATAAGAGAGTGGCTGTATC    394

BSNT_03754___    338 AAGAAGGATATGCGCTGATAGATGAGGTAATCCTTGAAGAGGACGGAAAG    387
                     |.|||||.||||..|||||.|||||.||.||.||.|||||.|||||||||
RBAM_023490__    395 AGGAAGGCTATGAACTGATTGATGAAGTGATTCTCGAAGAAGACGGAAAG    444

BSNT_03754___    388 TGCTATGAGGTGCTGGTAGCAGAAGCGGGAGACAGGGATGCGGCTTAT--    435
                     ||.|||||..|.||.||.||.|||.|.||.|||.|.||||||.|.|||  
RBAM_023490__    445 TGTTATGAAATCCTCGTTGCGGAAACTGGCGACCGTGATGCGCCGTATCG    494

BSNT_03754___    436 -GACGGT----ATTTCTTTATCAGCCGGGATGCTCGTCGGCCCTTTCTTG    480
                      ||| ||    ||..||      |||||.|||||||..||.||.||.||.
RBAM_023490__    495 GGAC-GTGCCGATGGCT------GCCGGAATGCTCGCGGGTCCGTTTTTA    537

BSNT_03754___    481 GCAAAAGAAAAAAATGCTGTCTTTTT---GAAAAAGTGGACACAAGAGCT    527
                     ..||||||.|..||||..||.|||.|   ||||   ||||..||.||.||
RBAM_023490__    538 TTAAAAGAGAGGAATGAAGTGTTTCTTCGGAAA---TGGAGCCAGGAACT    584

BSNT_03754___    528 TCAGCACACTCAAAGCATTTATGAACAGATCAGCCAAGCGGCGGATACAG    577
                     |.||||.|||.||...|||||||||||||||||||  ||.|||    ||.
RBAM_023490__    585 TAAGCATACTGAACAAATTTATGAACAGATCAGCC--GCAGCG----CAA    628

BSNT_03754___    578 AGC---AAAACAAACAAAAATTA---------AAGGAGC-----TCTCCG    610
                     |||   ||||..|..||||||||         ||.||||     |||   
RBAM_023490__    629 AGCATGAAAATCATGAAAAATTAGCTGAATTGAAAGAGCGGATTTCT---    675

BSNT_03754___    611 ATCGAATGGAGCTGTTAAAGGAGGTAATCGATCATGGATAA    651
                                |||.|.|||||||||||||..||||..|||
RBAM_023490__    676 -----------CTGCTGAAGGAGGTAATCGGACATGCTTAA    705


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