Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03752 and RBAM_023480

See Amino acid alignment / Visit BSNT_03752 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:03
# Commandline: needle
#    -asequence dna-align/BSNT_03752___yqfO.1.9828.seq
#    -bsequence dna-align/RBAM_023480___yqfO.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03752___yqfO-RBAM_023480___yqfO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03752___yqfO-RBAM_023480___yqfO.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03752___yqfO
# 2: RBAM_023480___yqfO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1138
# Identity:     874/1138 (76.8%)
# Similarity:   874/1138 (76.8%)
# Gaps:          32/1138 ( 2.8%)
# Score: 3255.0
# 
#
#=======================================

BSNT_03752___      1 ATGGATAAAAGTGTAAATGGGCAGCAGATCATCCAGCTGTTTGAACAATT     50
                     |||..||||..|||.||.||.|||.|.|||||||||||||||||||||||
RBAM_023480__      1 ATGCTTAAACATGTGAACGGACAGGAAATCATCCAGCTGTTTGAACAATT     50

BSNT_03752___     51 TTCTCCGAAAGCCTATGCGGTTGAAGGAGATAAAATCGGCCTGCAAATCG    100
                     |||.|||||.||.|.||||||.|||||||||||||||||||||||.||||
RBAM_023480__     51 TTCACCGAAGGCTTTTGCGGTGGAAGGAGATAAAATCGGCCTGCAGATCG    100

BSNT_03752___    101 GCACTTTAAACAAACCAATTAAAAATGTGATGGTTACACTTGATGTGTTA    150
                     |.||.||.||.||.||..|.||||||||.|||||.|||||.|||||..|.
RBAM_023480__    101 GTACATTGAATAAGCCGGTGAAAAATGTCATGGTGACACTGGATGTTCTG    150

BSNT_03752___    151 GA--GAGCGTTATCGATGAAGCGATTGAAAAAGAGGTTGACTTGATTATT    198
                     ||  .|.||.||  ||||||||.|||||.|||.|.||||||||.|||||.
RBAM_023480__    151 GAACAAACGGTA--GATGAAGCCATTGAGAAAAAAGTTGACTTAATTATC    198

BSNT_03752___    199 GCACACCATCCTCCTATTTTCCGGCCGCTAAAGCATATTTCAACAGATCA    248
                     ||.||||||||.||.|||||.||||||||.||.||.||..|.||.|||||
RBAM_023480__    199 GCCCACCATCCGCCGATTTTTCGGCCGCTTAAACAGATCACCACTGATCA    248

BSNT_03752___    249 GCCTGCCGGAAGGTTAATTGAAAAGTGTTTGAAGCATGATATTGCTGTTT    298
                     |||||.||||||..|.|||||.||.|||.|.||||||||||||||.||.|
RBAM_023480__    249 GCCTGGCGGAAGACTGATTGAGAAATGTATAAAGCATGATATTGCCGTAT    298

BSNT_03752___    299 ATGCAGCTCATACAAATTTAGACGTTGCGGACGGCGGCGTGAATGATTTG    348
                     ||||.||||||||.|||.|.||.||.|||||||||||.|||||||||.||
RBAM_023480__    299 ATGCGGCTCATACGAATCTTGATGTAGCGGACGGCGGTGTGAATGATCTG    348

BSNT_03752___    349 CTTGCTGAAGCATTAGAGCTGAGTGAGACGGAAGTGCTGGCACCTACTTA    398
                     |||||.|||||..|.|..||||..||.||.||||||||.|..||.||.||
RBAM_023480__    349 CTTGCCGAAGCTCTCGGCCTGACAGACACAGAAGTGCTCGTCCCGACATA    398

BSNT_03752___    399 TACGGATCCTCTGAAAAAGCTGGCAGTTTACGTGCCGAAGGAATATGAAG    448
                     |.|||||||.|||||||||||.||.||.||.||.|||||.||.|||||||
RBAM_023480__    399 TTCGGATCCGCTGAAAAAGCTTGCCGTATATGTTCCGAAAGACTATGAAG    448

BSNT_03752___    449 AGCAG--GTCAGAGCCGCGGTTGGAAATGCGGGGGCCGGCCATATCGGTG    496
                     |  ||  ||.|||.|.||..||||.||.||.||.||.||.||||||||..
RBAM_023480__    449 A--AGCTGTAAGAACTGCACTTGGCAACGCCGGAGCGGGACATATCGGCA    496

BSNT_03752___    497 AATACAGCCATTGCGCGTTTTCATCTGAAGGAATCGGCAGCTTTAAGCCA    546
                     |.|||||||||||||||||.||.|||||.||||||||||||||||||||.
RBAM_023480__    497 ATTACAGCCATTGCGCGTTCTCCTCTGAGGGAATCGGCAGCTTTAAGCCG    546

BSNT_03752___    547 TTGGACGGAGCTAAGCCTTTTATCGGTGAAGTGGGAGAGCTTGAGCTTGT    596
                     .||||.||.||..|.||.||||||||..|...|||||||||.||.||.||
RBAM_023480__    547 CTGGAAGGGGCAGAACCGTTTATCGGACAGACGGGAGAGCTGGAACTCGT    596

BSNT_03752___    597 TCATGAAGTAAGACTTGAGACTGTATTTCCTAAAAGCATCGAAAAAGCTG    646
                     .||||||||.|||||||||||.||.|||||...|||.||.||.|||.|.|
RBAM_023480__    597 CCATGAAGTGAGACTTGAGACCGTTTTTCCGGCAAGTATGGAGAAAACCG    646

BSNT_03752___    647 TTATCAACGCAATGATAAAAAGCCATCCATATGAAGAAGTCGCTTACGAT    696
                     |..|.||.||..|||.||||||||||||.||||||||.||.||.||.|||
RBAM_023480__    647 TCGTAAAAGCGCTGAAAAAAAGCCATCCGTATGAAGAGGTGGCATATGAT    696

BSNT_03752___    697 ATCTATCCTGTCGAACAGACTCCCGC-CGAAAAAGGGCTCGGCCGTGTCG    745
                     ||.|||||.||.||.|||.|| |||| .|||||||||||||||||..|||
RBAM_023480__    697 ATTTATCCGGTGGAGCAGTCT-CCGCTTGAAAAAGGGCTCGGCCGCATCG    745

BSNT_03752___    746 GAACCCTTAA--AACTGAGATGACGCTCAAGGAATTCGCTTTATTTGTGA    793
                     |||..|||.|  ||  ||.||||||||..|.||.||.||..|.|||||||
RBAM_023480__    746 GAAAACTTCAGCAA--GAAATGACGCTTGAAGAGTTTGCGCTGTTTGTGA    793

BSNT_03752___    794 AAGACAAGCTTGACGTCAATGGTGTCAGAATGGTGGGGGATGCTG--ACA    841
                     ||||.|||.|||||||.||.||.|||.|.|||||.||.|| || |  |||
RBAM_023480__    794 AAGAAAAGTTTGACGTTAACGGAGTCCGGATGGTCGGAGA-GC-GAAACA    841

BSNT_03752___    842 GCATGGTGAAAAAGGTAGCTGTTCTTGGCGGAGATGGAAACAAGTATATT    891
                     |||.|||||||||.||.||.|||||||||||.||.|||||.||.||||||
RBAM_023480__    842 GCAAGGTGAAAAAAGTCGCGGTTCTTGGCGGTGACGGAAATAAATATATT    891

BSNT_03752___    892 CATCATGCAAAACGAAAGGGAGCCGATGTTTACGTCACAGGAGATTTATA    941
                     .||||.|||||.||.||.||.||.|||||||||||.||.||.|||.|.||
RBAM_023480__    892 TATCAGGCAAAGCGGAAAGGTGCAGATGTTTACGTGACGGGCGATCTTTA    941

BSNT_03752___    942 CTTCCATGTGGCCCATGATGCGATGATGCTTGGCCTAAATGTGGTTGATC    991
                     .||||||||.||.|||||||||||||||.|.||..||||.||.||.||.|
RBAM_023480__    942 TTTCCATGTAGCGCATGATGCGATGATGATGGGATTAAACGTCGTGGACC    991

BSNT_03752___    992 CGGGCCATTACGCAGAAAAAATCATGAAAGAAGGCGTCAC----GAGAAA   1037
                     ||||.|||||.||.|||||.|||||||.|.||||   |||    ||| ||
RBAM_023480__    992 CGGGGCATTATGCTGAAAAGATCATGAGAAAAGG---CACGGCTGAG-AA   1037

BSNT_03752___   1038 ACTGACATCAATG--TGTAACGATAAAAAGTTTGACGTGAATATCTTTGT   1085
                     .||.||..|||||  .|.|  ||.|||||.|.|||.|||...||.||.|.
RBAM_023480__   1038 GCTTACGGCAATGGCCGGA--GAGAAAAACTATGATGTGCGCATTTTCGC   1085

BSNT_03752___   1086 TTCTGAAACAGATACAAATCCATTTACATTTC-TATAA   1122
                     |||.||||||||||||||.|||||||| |||| |||||
RBAM_023480__   1086 TTCCGAAACAGATACAAACCCATTTAC-TTTCTTATAA   1122


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