Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03747 and RBAM_023450
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:02
# Commandline: needle
# -asequence dna-align/BSNT_03747___yqfR.1.9828.seq
# -bsequence dna-align/RBAM_023450___yqfR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03747___yqfR-RBAM_023450___yqfR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03747___yqfR-RBAM_023450___yqfR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03747___yqfR
# 2: RBAM_023450___yqfR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1356
# Identity: 1050/1356 (77.4%)
# Similarity: 1050/1356 (77.4%)
# Gaps: 51/1356 ( 3.8%)
# Score: 4123.0
#
#
#=======================================
BSNT_03747___ 1 ATGTGCCGCTTTAAGGAGCTGGGAAAAATGAAAGAAACGAAATTTGA--- 47
|||||||||||.||||||||
RBAM_023450__ 1 ---------------------------ATGAAAGAAACTAAATTTGATGG 23
BSNT_03747___ 48 ----ACTTTATGAATTGAAACCATTTATTATAGATGCAGTACATCGCCTT 93
|.|||| |||||.|||||||||||||||||.||.||||||
RBAM_023450__ 24 ATACAATTTA-------AAACCGTTTATTATAGATGCAGTTCACCGCCTT 66
BSNT_03747___ 94 GGTTTTTACGAACCAACTGATATCCAGAAAAGGCTGATTCCTGCAGTGTT 143
||||||||.|||||.||.|||||.||.||..|.|||||.|||||.||..|
RBAM_023450__ 67 GGTTTTTATGAACCGACAGATATTCAAAAGCGTCTGATACCTGCCGTACT 116
BSNT_03747___ 144 AAAAAAAGAAAGCGTCATCGGCCAGTCTCAGACGGGTACTGGAAAGACTC 193
.|||||.||||||||.|||||.|||||.||||||||.||.||.||.||.|
RBAM_023450__ 117 GAAAAACGAAAGCGTGATCGGGCAGTCCCAGACGGGGACGGGGAAAACCC 166
BSNT_03747___ 194 ACGCTTATTTACTGCCTTTATTAAACAAAATCGATCCTGCTAAGGATGTC 243
||||.||||||.||||..|.||.||....||.|||||.|.|...|||...
RBAM_023450__ 167 ACGCCTATTTATTGCCAATTTTGAATCGGATTGATCCGGGTTCTGATACG 216
BSNT_03747___ 244 GTTCAGGTAGTCATTACGGCTCCGACAAGAGAGCTAGCCAACCAGATTTA 293
||.||||..||.||.|||||.|||||.||||||||.|||||.||||||.|
RBAM_023450__ 217 GTACAGGCCGTTATCACGGCGCCGACGAGAGAGCTTGCCAATCAGATTCA 266
BSNT_03747___ 294 TCAGGAAGCGCTTAAAATCACGCAGGGTGAGGAAGGC-AGTCAGATTCGC 342
||||||||||||.|||||.||.|||||||.|||||.| || |.|||.||.
RBAM_023450__ 267 TCAGGAAGCGCTCAAAATTACACAGGGTGCGGAAGACGAG-CCGATCCGG 315
BSNT_03747___ 343 TCGAAATGTTTTATCGGAGGCACTGATAAACAAAAATCAATTGATAAATT 392
.|.|||||.||.|||||.||.||.||.||.|||||||||||||||||..|
RBAM_023450__ 316 ACAAAATGCTTCATCGGCGGGACGGACAAGCAAAAATCAATTGATAAGCT 365
BSNT_03747___ 393 GAAAATACAGCCGCATCTGGTTGTCGGTACACCCGGACGGATTGCTGACT 442
|||||.||||||.|||||.||.|||||.||.||.||.|||||.||.||..
RBAM_023450__ 366 GAAAACACAGCCTCATCTCGTCGTCGGAACGCCGGGCCGGATCGCGGATC 415
BSNT_03747___ 443 TAATCAAAGAACAGGCGTTAAGTGTTCATAAAGCGGAATCTCTTGTTATT 492
|.||.||.|..|||||.||.|..||..||||||||.|.|||||.||.|||
RBAM_023450__ 416 TGATTAAGGCGCAGGCATTGAACGTCTATAAAGCGCAGTCTCTCGTCATT 465
BSNT_03747___ 493 GATGAAGCGGATCTAATGCTGGACATGGGATTCCTTGCAGATGTAGATTA 542
||.|||||.|||||.|||||.||.|||||.||..|.|.|||.||.|||||
RBAM_023450__ 466 GACGAAGCTGATCTGATGCTTGATATGGGCTTTTTAGAAGACGTTGATTA 515
BSNT_03747___ 543 CATCGGTTCCCGCATGCCTGAGGATCTGCAAATGCTTGTGTTCTCAGCGA 592
||||||.||.||.|||||.||.||.|||||.|||||||||||||||||.|
RBAM_023450__ 516 CATCGGGTCGCGTATGCCGGAAGAACTGCAGATGCTTGTGTTCTCAGCTA 565
BSNT_03747___ 593 CCATACCGGAAAAGCTGAAACCATTTTTGAAGAAATACATGGAAAATCCG 642
|.||.||||||||||||||.||.||||||||.||.||.||||||||||||
RBAM_023450__ 566 CGATTCCGGAAAAGCTGAAGCCGTTTTTGAAAAAGTATATGGAAAATCCG 615
BSNT_03747___ 643 AAATACGCCCATGTGGAGCCAAAACAG-GTGACTGCTGCGAAA--ATCGA 689
||.|||||.|||||.|||||.||| || .|.||.|| ||||| ||.||
RBAM_023450__ 616 AAGTACGCGCATGTTGAGCCGAAA-AGAATCACAGC--CGAAAAGATTGA 662
BSNT_03747___ 690 GCATATCCTCATTCCTTCGAAACATCGTGACAAGGACAAGCTCCTTTTTG 739
.|||.|..|..|||||||.|||||.|||||.||.|||||.||.|||||||
RBAM_023450__ 663 ACATGTGTTGGTTCCTTCTAAACAGCGTGATAAAGACAAACTGCTTTTTG 712
BSNT_03747___ 740 ACATCATGTCGCATCTGAATCCATACTTGGGGATTGTGTTTGCCAACACG 789
|.||.|||||.||||||||.||.||..||||.|||||||||||.||.|||
RBAM_023450__ 713 AAATGATGTCTCATCTGAACCCTTATCTGGGCATTGTGTTTGCAAATACG 762
BSNT_03747___ 790 AAAAATACGGCTGACCATATTGCCCAGTATCTGACTGGCAAAGGCATGAA 839
|||||.|||||||||||||||||..|.||.|||||||..|||||.||||.
RBAM_023450__ 763 AAAAACACGGCTGACCATATTGCGAAATACCTGACTGAAAAAGGAATGAG 812
BSNT_03747___ 840 AATCGG-CTTGCTGCACGGCGGATTAACACCACGTGAGCGGAAAAAAGTC 888
|.|||| ||| ||||||||.||||||||.||.||||||||.||.||.||.
RBAM_023450__ 813 AGTCGGTCTT-CTGCACGGGGGATTAACGCCGCGTGAGCGTAAGAAGGTA 861
BSNT_03747___ 889 ATGAAGCAGATCAATGATTTGGAATTCACTTATGTCATTGCAACTGACCT 938
|||||||||||.||||||.||||||||||||||||||||||.||.|||||
RBAM_023450__ 862 ATGAAGCAGATTAATGATCTGGAATTCACTTATGTCATTGCGACAGACCT 911
BSNT_03747___ 939 TGCCGCAAGAGGTATTGATATTAAAGGTGTCAGCCATGTTATCAACTATG 988
|||.||.|||||.|||||.||||||||.||.|||||.||.||||||||.|
RBAM_023450__ 912 TGCGGCTAGAGGAATTGACATTAAAGGCGTAAGCCACGTCATCAACTACG 961
BSNT_03747___ 989 AGCTGCCGGATGATCTCGATTTCTATGTTCACCGTGTGGGCAGAACGGCT 1038
||||.|||||.|||.|.|||||.||||||||||||||.||.|||||.||.
RBAM_023450__ 962 AGCTTCCGGACGATTTGGATTTTTATGTTCACCGTGTCGGAAGAACTGCA 1011
BSNT_03747___ 1039 CGTGCCGGCTCATCAGGACAAGCGATGACCATTTATGAGCTTACTGATGA 1088
||.|||||.||||||||.|||||..|||||||||||||||||.||||.||
RBAM_023450__ 1012 CGCGCCGGTTCATCAGGCCAAGCACTGACCATTTATGAGCTTTCTGACGA 1061
BSNT_03747___ 1089 GGATGCATTAGTAAGACTTGAAAAAATGGGCATCGAATTTGATTACTTAG 1138
.|||||..|.|.||||||||||||.||||||||.|..|||||.||....|
RBAM_023450__ 1062 AGATGCGCTCGCAAGACTTGAAAAGATGGGCATTGTGTTTGACTATGCGG 1111
BSNT_03747___ 1139 AGCTTGAAAAGGGCGAATGGAAAAAAGGCGATGACCGTCAGCGCCGCAAA 1188
||||||.|||.||.||||||||.||||||||||||||.||.|||||.|||
RBAM_023450__ 1112 AGCTTGTAAACGGGGAATGGAAGAAAGGCGATGACCGCCACCGCCGTAAA 1161
BSNT_03747___ 1189 AAGCGTAAAAAAACGCCGAATGAAGCGGATGAAATTGCTCATCGTCTCGT 1238
||.||.|||||.|||.|.|||||.||.||..|||||||..|.||.|||||
RBAM_023450__ 1162 AATCGCAAAAAGACGGCAAATGAGGCTGACCAAATTGCGAAACGCCTCGT 1211
BSNT_03747___ 1239 GAAAAAGCCGAAGAAGGTTAAGCCTGGGTATAAAAAGAAAATGAGCTATG 1288
.|||||||||||.||.||.|||||.||.||||||||||||||||||||.|
RBAM_023450__ 1212 AAAAAAGCCGAAAAAAGTAAAGCCGGGCTATAAAAAGAAAATGAGCTACG 1261
BSNT_03747___ 1289 AGATGGAGAAAATCAAGAAAAAACAGAGAAGAAACCAATCTAAGAAAAGA 1338
|.|||||.|||||.||.||.||.||||||||||||||||||||.|.|.||
RBAM_023450__ 1262 AAATGGAAAAAATTAAAAAGAAGCAGAGAAGAAACCAATCTAACAGAGGA 1311
BSNT_03747___ 1339 AAGTAG 1344
||||||
RBAM_023450__ 1312 AAGTAG 1317
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