Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03746 and RBAM_023440

See Amino acid alignment / Visit BSNT_03746 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:02
# Commandline: needle
#    -asequence dna-align/BSNT_03746___yqfS.1.9828.seq
#    -bsequence dna-align/RBAM_023440___yqfS.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03746___yqfS-RBAM_023440___yqfS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03746___yqfS-RBAM_023440___yqfS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03746___yqfS
# 2: RBAM_023440___yqfS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 900
# Identity:     691/900 (76.8%)
# Similarity:   691/900 (76.8%)
# Gaps:          39/900 ( 4.3%)
# Score: 2712.0
# 
#
#=======================================

BSNT_03746___      1 ---------------------------ATGAGCGGAAAACATATGCTTCT     23
                                                ||||||||||||||||||||.||
RBAM_023440__      1 TTGCTGAAAATAGGTTCACACGTCTCAATGAGCGGAAAACATATGCTCCT     50

BSNT_03746___     24 GGCTGCAAGCCAGGAAGCAGTCTCTTATGGGGCGAATACGTTTATGATCT     73
                     .||.||||||.|||||||.||.||.||.||||||||.||.||||||||||
RBAM_023440__     51 TGCCGCAAGCAAGGAAGCTGTTTCGTACGGGGCGAACACATTTATGATCT    100

BSNT_03746___     74 ATACAGGCGCACCGCAAAATACGCGCCGAAAGAAAATTGAAGACTTAAAT    123
                     ||||.|||||.||.|||||.||||||||.||.||||||||.|||||.|||
RBAM_023440__    101 ATACGGGCGCTCCCCAAAACACGCGCCGCAAAAAAATTGAGGACTTGAAT    150

BSNT_03746___    124 ATAGAAGCAGGCCGGGCACATATGCAAGAAAACGGCATTGACGAGATTAT    173
                     ||.|||||.|||||.||.||||||.|.|||||||||||.||.||||||.|
RBAM_023440__    151 ATTGAAGCGGGCCGCGCCCATATGAAGGAAAACGGCATCGATGAGATTGT    200

BSNT_03746___    174 CGTACACGCGCCTTATATTATTAATATTGGCAACACGACAAATCCGTCCA    223
                     |||.||.|||||.||.||.|||||.|||||.||.||||||||||||.|.|
RBAM_023440__    201 CGTGCATGCGCCGTACATCATTAACATTGGAAATACGACAAATCCGGCAA    250

BSNT_03746___    224 CTTTTGAGCTGGGTGTTGATTTTCTTCGTTCAGAAATTGAACGGACAGCG    273
                     |.|||||||||||.|||||||||||.|||||.|||||||||.|.||.||.
RBAM_023440__    251 CATTTGAGCTGGGCGTTGATTTTCTGCGTTCTGAAATTGAAAGAACGGCA    300

BSNT_03746___    274 GCCATCGGAGCGAAGCAAATTGTCCTTCATCCTGGTGCTCACGTAGGGGC    323
                     ||.|||||.||||..||.||.||.||||||||.||.||.||.||.||.||
RBAM_023440__    301 GCGATCGGCGCGAGACAGATCGTGCTTCATCCAGGGGCGCATGTCGGAGC    350

BSNT_03746___    324 AGGAGCTGAAGCCGGCATCAAAAAAATTATTGAAGGCTTAAATGAAGTGA    373
                     .||.|||||..|.||||||||||||||.||||||||.|||||.|||||||
RBAM_023440__    351 CGGGGCTGAGACGGGCATCAAAAAAATCATTGAAGGTTTAAACGAAGTGA    400

BSNT_03746___    374 TTGATCCGAATCAAAATGTCCAGATTGCATTAGAAACAATGGCTGGAAAA    423
                     |||.|||....|||||.||.||||||||..|.||.||||||||.||.|||
RBAM_023440__    401 TTGTTCCCGGGCAAAACGTGCAGATTGCGCTGGAGACAATGGCGGGCAAA    450

BSNT_03746___    424 GGATCGGAATGCGGCAGAAGCTTTGAGGAGCTTGCACAGATTATCGAAGG    473
                     |||||.||||||||.|||||||||||.|||||.||..||||.||.|..||
RBAM_023440__    451 GGATCAGAATGCGGAAGAAGCTTTGAAGAGCTGGCCGAGATCATTGCGGG    500

BSNT_03746___    474 CGTTACACACAATGAGCAGCTGTCAGTGTGCTTTGACACGTGCCATACAC    523
                     .||.||.||.|||||.||.||.||.||.|||||||||||.|||||.||.|
RBAM_023440__    501 AGTCACGCATAATGAACATCTATCCGTCTGCTTTGACACTTGCCACACCC    550

BSNT_03746___    524 ATGATGCCGGGTATAACATTGTCG---AAGACTTTGACGGAGTGCTGAAC    570
                     ||||.|||||||||.|   |||||   |.||.||||||||.||.||.|||
RBAM_023440__    551 ATGACGCCGGGTATGA---TGTCGCTAATGATTTTGACGGTGTTCTTAAC    597

BSNT_03746___    571 GAGTTCGATAAAATCATTGGCATTGACCGTATTAAAGTGCTTCATATCAA    620
                     |||||.|||||||||.|.|||||.||.||.||.|||||.||||||.|.||
RBAM_023440__    598 GAGTTTGATAAAATCGTCGGCATCGATCGGATAAAAGTCCTTCATGTTAA    647

BSNT_03746___    621 TGACAGCAAAAATGTCAAAGGTGCGAGAAAAGACCGCCATGAAAATATTG    670
                     .|||||.||||||.|.|||||.||..|.||||||||||||||||||||.|
RBAM_023440__    648 CGACAGTAAAAATATTAAAGGCGCCCGGAAAGACCGCCATGAAAATATCG    697

BSNT_03746___    671 GCTTTGGTGAAATAGGTTTTGACGCACTGCAATATGTTGTTCACCATGAG    720
                     |.||.||.||.||.|||||||||||.|||||.||..|.|||||.||.|||
RBAM_023440__    698 GGTTCGGAGAGATCGGTTTTGACGCTCTGCAGTACATCGTTCATCACGAG    747

BSNT_03746___    721 CAGTTAAAAGACATTCCAAAAATTCTTGAAACACCATACGTCGGTGAAGA    770
                     |||.|....||.|||||.|||||.||.||||||||.||.||.||.|||||
RBAM_023440__    748 CAGCTTGCCGATATTCCGAAAATCCTCGAAACACCGTATGTAGGCGAAGA    797

BSNT_03746___    771 TAAAAAGAACAAAAAACCGCCATACCGTTTTGAGATTGAAATGCTGAAAG    820
                     .||.||.||.||.||.|||||.|||||||||||.||.|||||||||||||
RBAM_023440__    798 CAAGAAAAATAAGAAGCCGCCGTACCGTTTTGAAATCGAAATGCTGAAAG    847

BSNT_03746___    821 AAAAACAATTTGATGA-TACATTGCTCGAAAAGATTTTACAG--CAATAA    867
                     ||||.||.||||||.| .|..|| ||.|||||.||.|  |||  ||||||
RBAM_023440__    848 AAAAGCAGTTTGATAAGGAGCTT-CTTGAAAAAATAT--CAGCTCAATAA    894


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03746 and RBAM_023440

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
