Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_03738 and RBAM_023370

See Amino acid alignment / Visit BSNT_03738 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:01
# Commandline: needle
#    -asequence dna-align/BSNT_03738___yqfZ.1.9828.seq
#    -bsequence dna-align/RBAM_023370___yqfZ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03738___yqfZ-RBAM_023370___yqfZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03738___yqfZ-RBAM_023370___yqfZ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03738___yqfZ
# 2: RBAM_023370___yqfZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 313
# Identity:     219/313 (70.0%)
# Similarity:   219/313 (70.0%)
# Gaps:          23/313 ( 7.3%)
# Score: 752.0
# 
#
#=======================================

BSNT_03738___      1 ATGAAGCGTCTCACCTTAGTATGCAGCATTGTTTTTATACTTTTTATTCT     50
                     ||||||||.||.||.||.||||.|.|||.|.|.|||.|..|.||.|||.|
RBAM_023370__      1 ATGAAGCGGCTTACTTTTGTATTCGGCAGTTTATTTGTGATATTCATTAT     50

BSNT_03738___     51 TGTTTATGACCTTAAAATTGGAACCATCCCCATTCAGGACCTCCCTGTCT    100
                     ..||||.||.||||||||.||.||.|||||...|||.|||||.||.|..|
RBAM_023370__     51 CTTTTACGATCTTAAAATCGGCACGATCCCTTCTCAAGACCTTCCAGCAT    100

BSNT_03738___    101 ATGAAGCATCAGCAAAAACGGCTGTACAAGAACCGGCTTATAAAACGGTG    150
                     |.|.|||..|.|||.|..|.||...|||.|||.|..|.||.|.||||||.
RBAM_023370__    101 ACGCAGCGGCGGCACAGCCAGCCCGACAGGAATCTTCATACAGAACGGTT    150

BSNT_03738___    151 AAGGT----AAAGCCGGGTGATACGGTTATGTCGATAGTCGGATC-----    191
                     |.|||    |||    ||.||||||||.||||||||||||||..|     
RBAM_023370__    151 ACGGTCAAAAAA----GGCGATACGGTGATGTCGATAGTCGGCGCACATA    196

BSNT_03738___    192 -AGCAGGTTCTCCGGATGACATTGTAAAGGATTTTGAAGCACTGAATCCA    240
                      ||||      ||.|||||.||||.|.|.|||||||||||.||||||||.
RBAM_023370__    197 AAGCA------CCAGATGATATTGCACAAGATTTTGAAGCGCTGAATCCG    240

BSNT_03738___    241 AATGTGAAAGCCAATGCCATTCAAGCGGGAACAGCGTATAAATTCCCGGT    290
                     |||||.|||||.|||||||||||.||.||.||.||.|||||||||||.||
RBAM_023370__    241 AATGTAAAAGCAAATGCCATTCAGGCAGGCACCGCTTATAAATTCCCCGT    290

BSNT_03738___    291 CTACC---CTTAA    300
                     |||||   .||||
RBAM_023370__    291 CTACCGCAATTAA    303


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.