Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03736 and RBAM_023360
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:01
# Commandline: needle
# -asequence dna-align/BSNT_03736___yqgB.1.9828.seq
# -bsequence dna-align/RBAM_023360___yqgB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03736___yqgB-RBAM_023360___yqgB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03736___yqgB-RBAM_023360___yqgB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03736___yqgB
# 2: RBAM_023360___yqgB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 778
# Identity: 577/778 (74.2%)
# Similarity: 577/778 (74.2%)
# Gaps: 32/778 ( 4.1%)
# Score: 2060.0
#
#
#=======================================
BSNT_03736___ 1 GTGAATGTGTTT-CAGCTTTTCATT-AAAAGTACATACTCTCCCCGTGAT 48
.||||..|.||| |.||||| ||| |||||||||||.|||||....|||
RBAM_023360__ 1 TTGAACATATTTACGGCTTT--ATTGAAAAGTACATATTCTCCGGCAGAT 48
BSNT_03736___ 49 ATTGCAAAAACAAGATTTCAAGGAATCGGAAAAGCGATTCTTTATGTATT 98
||||||||||||.|.|||||.||.||.|||||||||||.|||||||||||
RBAM_023360__ 49 ATTGCAAAAACACGGTTTCAGGGGATAGGAAAAGCGATCCTTTATGTATT 98
BSNT_03736___ 99 TTTGCTCTCTGTCCTGTTTGCAATCCCTACCGCTTATTATGTAAGTACAG 148
||||||.||||||||.|||.|..|.||.|.|||||||||..|..|..|.|
RBAM_023360__ 99 TTTGCTGTCTGTCCTTTTTACGCTGCCAAGCGCTTATTACCTTTGCTCCG 148
BSNT_03736___ 149 GGACCGTAAAATCAATGAACGGCTTTAAAACTGTTTTAAACAAAGATTTC 198
|.||||||||.|||||||||||.||.|||||.||.|||||.|||||||||
RBAM_023360__ 149 GCACCGTAAACTCAATGAACGGTTTCAAAACCGTGTTAAAGAAAGATTTC 198
BSNT_03736___ 199 CCTGATTTCACAATTTCAAACGGCAAACTTCAAACGGATGAGAAAAAAG- 247
||||||||||..|||||||||||..||.|.||.||| ||||
RBAM_023360__ 199 CCTGATTTCAGCATTTCAAACGGAGAATTGCAGACG---------AAAGC 239
BSNT_03736___ 248 --------CCACGGAATCTCAAGCAAATGGTTTCGTTATCGTGTTCGATC 289
|.|.||||.|..||||.||.||.|||||.||||||||.||||
RBAM_023360__ 240 GTCCGCCTCTAAGGAAACGGAAGCGAACGGGTTCGTCATCGTGTTTGATC 289
BSNT_03736___ 290 CGACAGACTCCTATGGCACTGAACAAATTGAAGCAAAGCAAAACGCGATC 339
|||||||..|.||.|||.|..|||||||.|..||.||.|||||.||||||
RBAM_023360__ 290 CGACAGATGCTTACGGCGCGAAACAAATAGCGGCCAAACAAAATGCGATC 339
BSNT_03736___ 340 GGCATCCTTCAGAACAAATTTGTTTTGGCCATTGACGGACAAGCCCAAGA 389
|||||..|..|.||.|||.|.||..|.||..|.||||||||.||...|||
RBAM_023360__ 340 GGCATTTTGAAAAATAAAATGGTGCTTGCTGTAGACGGACAGGCGACAGA 389
BSNT_03736___ 390 AATGTCTTACTCAATGATGCCATCAGA-GTTACAGAAAAAAGATGTCATT 438
||||..|||.||..|||||||..|.|| .|.||| ||||||||..||||.
RBAM_023360__ 390 AATGAATTATTCGCTGATGCCTGCTGATATCACA-AAAAAAGAAATCATA 438
BSNT_03736___ 439 GCAGGTTTAAACCAAAATAAAGCGATGATTGTAACTGTTCTCTCAGATCT 488
.|||..|||||||||||||||.|.|||||.||.||.||.||.||.|.|||
RBAM_023360__ 439 TCAGCATTAAACCAAAATAAAACAATGATCGTCACCGTCCTGTCCGTTCT 488
BSNT_03736___ 489 TATTTTTCTCGTAACAGCAGCGGGAAAATTTATTGAAGTATCGTTTTTAG 538
..|.||..||.|.|||||.||.||||||||.|||||||||||.|||.|.|
RBAM_023360__ 489 GCTGTTCATCATGACAGCGGCCGGAAAATTCATTGAAGTATCATTTCTCG 538
BSNT_03736___ 539 CGCTTATCGGGTTAATCATT-AAGAATTCTCAGA-AAAAACATT-TATCC 585
|..|.|||||..|.|| ||| ||.|||.|.||.| |||.||||| .||
RBAM_023360__ 539 CCGTCATCGGCCTCAT-ATTAAAAAATGCGCAAAGAAAGACATTGAAT-- 585
BSNT_03736___ 586 TATCATCAGCTCTGGAAGCTTTCTGCTTATTCCATCACCCTTTCAACTGT 635
||.||.|||||||||||||||||.|||||||||||.||.|||||.||..|
RBAM_023360__ 586 TACCAGCAGCTCTGGAAGCTTTCGGCTTATTCCATTACACTTTCGACCAT 635
BSNT_03736___ 636 ATTCTTTACAATCATGCGGGCACTAGAAGCAACCGTACCAAGTGAATTTT 685
|||||||||.||||||||.||.||.|.....||.||.||.||||||||||
RBAM_023360__ 636 ATTCTTTACGATCATGCGCGCGCTTGTTATTACAGTGCCGAGTGAATTTT 685
BSNT_03736___ 686 TGCTGAACTGGTTTGTCAATTTTGTCATCCTGTTTCTCGTTTTAAAAGAG 735
|..||||.||||||||.||.|||.|||||||.||.|||||.|||||||||
RBAM_023360__ 686 TAGTGAATTGGTTTGTAAACTTTATCATCCTTTTCCTCGTCTTAAAAGAG 735
BSNT_03736___ 736 ATTCCGTCCAA-AAAAGCTGCTGTATAA 762
||.||| |||| ||||.|.|||||.|||
RBAM_023360__ 736 ATACCG-CCAAGAAAAACAGCTGTGTAA 762
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