Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03732 and RBAM_023320
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Amino acid alignment /
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:01
# Commandline: needle
# -asequence dna-align/BSNT_03732___pbpA.1.9828.seq
# -bsequence dna-align/RBAM_023320___pbpA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03732___pbpA-RBAM_023320___pbpA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03732___pbpA-RBAM_023320___pbpA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03732___pbpA
# 2: RBAM_023320___pbpA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2242
# Identity: 1583/2242 (70.6%)
# Similarity: 1583/2242 (70.6%)
# Gaps: 185/2242 ( 8.3%)
# Score: 5470.5
#
#
#=======================================
BSNT_03732___ 1 ATGAGGAGAAATAAACCAAAAAAGCAAAAT-------CATAAAGAGAAAA 43
|||||||||||| |||||| ||||| .|.|||||.||.|
RBAM_023320__ 1 ATGAGGAGAAAT------AAAAAG-AAAATAGCTGTAAACAAAGAAAAGA 43
BSNT_03732___ 44 AGAAGTCGCTTCCGATCCGGCTGAATATTTTATTTTTAGCTGCCTTTGTT 93
|.||.||.||.|||||||||||.|||.||||.|||||.||.||.|||.||
RBAM_023320__ 44 AAAAATCACTGCCGATCCGGCTTAATTTTTTGTTTTTGGCCGCGTTTCTT 93
BSNT_03732___ 94 ATATTCACCTGGATTATTGTGGAACTGGGCATCAAGCAGATCGTGCAAGG 143
||.||.||.||||||||.||.||.||.|||||||||||||||||.||.||
RBAM_023320__ 94 ATTTTTACTTGGATTATCGTCGAGCTTGGCATCAAGCAGATCGTTCAGGG 143
BSNT_03732___ 144 CGATGATTACAAAAACCAAGCGAATAAGCAGGAACAAAGTGAAGTCAGCT 193
.||||||||.||||||...||.|||||||||||..|...|||.||||||.
RBAM_023320__ 144 TGATGATTATAAAAACGCCGCTAATAAGCAGGAGGAGTCTGATGTCAGCA 193
BSNT_03732___ 194 CAGCGGTACCACGCGGGAAAATTTATGATCGAAACTTTAATGCCATTGTG 243
|.|||||.||..|.||||||||.||.||.||.|||.|.|||.||||.||.
RBAM_023320__ 194 CGGCGGTTCCGAGAGGGAAAATATACGACCGGAACCTAAATCCCATCGTA 243
BSNT_03732___ 244 ACAAATAAGGCTTTAAATGCAATCACATACACGAGATCTAAATCGACCAC 293
||.|||||.||.||||||||.||.|||||.||..|.||....||.|||||
RBAM_023320__ 244 ACGAATAAAGCATTAAATGCGATTACATATACACGTTCAGCCTCAACCAC 293
BSNT_03732___ 294 GCAAGAACAGCGCTTAAAGATCGCAAAAAAGCTGTCTGACATGATCAAAG 343
.||.|..|||||.|||||.|||||||||||.|||||.|..|||||.||.|
RBAM_023320__ 294 CCAGGCGCAGCGTTTAAAAATCGCAAAAAAACTGTCGGGTATGATTAAGG 343
BSNT_03732___ 344 TCGATACAAAAAAAGTAACAGAACGGGATAAAAAAGATTATTGGATTTTG 393
|....||.|||||.||.||.||.||||||||||||||.||||||||.||.
RBAM_023320__ 344 TAAGCACCAAAAAGGTGACTGAGCGGGATAAAAAAGACTATTGGATGTTA 393
BSNT_03732___ 394 ACTAGACCGAAAGAAGCGAAAAAGCTCATTAGCTCTAAAGAAAGACAGCA 443
||.||.||..|.|||||||||||.||.||||...|..||||||..||..|
RBAM_023320__ 394 ACGAGGCCTGATGAAGCGAAAAAACTGATTACGGCCGAAGAAAAGCAAAA 443
BSNT_03732___ 444 GGTTGAAGACAAAAAAATATCCGATGACGATTTATACCAGCTTCAGCTAA 493
.|.|||||||||||||.|.||.||.||.||||||||.|||||||||||.|
RBAM_023320__ 444 AGCTGAAGACAAAAAACTGTCTGACGATGATTTATATCAGCTTCAGCTGA 493
BSNT_03732___ 494 AACGGATTACTGATAAGCAGCTGAATGAATTGACGGATAAAGATATGCAG 543
||||.||.||.||.||.|||||||||||..|.||....|||||.||||||
RBAM_023320__ 494 AACGCATCACAGACAAACAGCTGAATGAGCTCACTTCAAAAGACATGCAG 543
BSNT_03732___ 544 ATCCTCGCTATCAAAAGGCGTATGGATTCAGGCTATGCTTTGACCCCTCA 593
|||||.||.||||||||||..||||||||||||||..|..||||.|||||
RBAM_023320__ 544 ATCCTTGCGATCAAAAGGCAGATGGATTCAGGCTACTCCCTGACGCCTCA 593
BSNT_03732___ 594 ATATATTAAAAATGAGGATGTATCAGCGAAGGAAATGGCAGTGGTAAGTG 643
|||.||.||||||||.|..||.||.||.||.||||||||.||.||.||.|
RBAM_023320__ 594 ATACATCAAAAATGAAGGCGTGTCGGCAAAAGAAATGGCCGTCGTCAGCG 643
BSNT_03732___ 644 AACATTTAGACGAACTGCCAGGTGTTGATGTCACGTCCGATTGGGAACGT 693
||||||||||.||||||||.||.|||||.||.|||||.||.||||||||.
RBAM_023320__ 644 AACATTTAGATGAACTGCCGGGAGTTGACGTGACGTCTGACTGGGAACGG 693
BSNT_03732___ 694 GAATATCCGTATA----------AAAACCTTCTTCGCTCAGTGCTCGGAA 733
...|||||..||| |||| |||||.|||||.|
RBAM_023320__ 694 TCTTATCCAAATAAAGGGTTGTTAAAA----------TCAGTTCTCGGCA 733
BSNT_03732___ 734 GTGTGTCCAGCTCTAATGAAGGATTGCCGTCCAA-CTTGCTCGACCATTA 782
||||.||.|||||.||.||||||.|.||.||.|| ||| ||.||.|||||
RBAM_023320__ 734 GTGTCTCGAGCTCCAACGAAGGACTCCCTTCAAATCTT-CTTGAGCATTA 782
BSNT_03732___ 783 TCTGTCGCTTGGCTACAGCCGAAATGACAGGGTCGGAAAAAGCTATCTGG 832
|.||||.||||||||||||.|.||||||||.||.||||||||.|||.|.|
RBAM_023320__ 783 TTTGTCACTTGGCTACAGCAGGAATGACAGAGTAGGAAAAAGTTATTTAG 832
BSNT_03732___ 833 AATACCAATATGAAAGCCTTCTGCAGGGCCAAAAAGCAAAAGTCGA-AAA 881
|.||.||||||||||..||.||||||||||||||||..||||| || |||
RBAM_023320__ 833 AGTATCAATATGAAAATCTGCTGCAGGGCCAAAAAGAGAAAGT-GAGAAA 881
BSNT_03732___ 882 TATCACAGATTCAAAAGGCAATGTCACGGGAACAAAAACGGTATCTGAAG 931
|.|.||||||||....||.||.||.||.|..|||.|||||||.||..|||
RBAM_023320__ 882 TGTGACAGATTCCTCTGGAAACGTAACAGATACAGAAACGGTTTCAAAAG 931
BSNT_03732___ 932 GCAAAGCCGGGAAAGATCTTGTACTAACAATTGATATTGATTTGCAAAAA 981
|.|||||||||.|.|||.|.||.||.||.||.||||..||.|||||||||
RBAM_023320__ 932 GTAAAGCCGGGGATGATTTAGTGCTCACTATAGATACCGAATTGCAAAAA 981
BSNT_03732___ 982 TCAGTGGAAAAAATTATTGAGAAAAAACTTAAA--GCTGCTAAAGCAAGA 1029
...||.|||||||||||||||||||| ||.|| |||||.||.||||||
RBAM_023320__ 982 GACGTTGAAAAAATTATTGAGAAAAA--TTTAAGGGCTGCAAAGGCAAGA 1029
BSNT_03732___ 1030 CCTAGTACCGAATTGTTGGATCGTGCATTCGTTGTCATGATGGACCCTAG 1079
||.|||||..|.|||.|.||..|.|||||.||.||.||||||||.||..|
RBAM_023320__ 1030 CCGAGTACACAGTTGCTTGACAGAGCATTTGTCGTAATGATGGATCCCCG 1079
BSNT_03732___ 1080 AAACGGCGAAGTGCTGACAATGGCAGGGAAGCAGATTAAACGAGAAAATG 1129
.||.||.||||||||.||||||||.||.||.||||||||||.||.|.|.|
RBAM_023320__ 1080 TAATGGAGAAGTGCTTACAATGGCGGGTAAACAGATTAAACAAGTAGACG 1129
BSNT_03732___ 1130 GAGCCTATAAGTTTGATGATTATGCATTAGGAGCCATGACTTCATCCTAC 1179
|....|||||..|.||||||||||||.|||||.|.||||||||.||.||.
RBAM_023320__ 1130 GCAAATATAAAATCGATGATTATGCACTAGGAACAATGACTTCCTCTTAT 1179
BSNT_03732___ 1180 GCTATGGGATCAGCTGTAAAAGGTGCAACCGTTTTGACCGGTCTTCAAAC 1229
...|||||.||||||||||||||.|||||..|.||.||.|||..||||||
RBAM_023320__ 1180 AACATGGGCTCAGCTGTAAAAGGGGCAACATTGTTAACAGGTTATCAAAC 1229
BSNT_03732___ 1230 TGGAGCGATTAATTTGAAT----ACTGTATTTAAGGATGAACCATTGTAT 1275
.||.||.||.|| ||| |.|.||||||.||||||| .||.||.
RBAM_023320__ 1230 AGGTGCTATAAA----AATCGGAAATATATTTACGGATGAA--GTTTTAA 1273
BSNT_03732___ 1276 ATCGGCCAGGATAAAAGA-------GGGAAAAAATCTTGGCAA----AAC 1314
|| ||.||||| ...|||||||| ||.|| ||
RBAM_023320__ 1274 AT--------ATTAAAGACTCTCCTCCTAAAAAATC--GGTAAGTGTAA- 1312
BSNT_03732___ 1315 TTAGGGCCGGT---TGGTATTCAAACTGCATTAGAGAAGTCATCAAACGT 1361
|.||||||.| ||.|.| |||||||.|.|||...|||||.|||||
RBAM_023320__ 1313 -TGGGGCCGATAAATGATTT---AACTGCACTTGAGCGTTCATCTAACGT 1358
BSNT_03732___ 1362 TTTTATGTTTAAAACAGCTATTGCAGTTGGTAAAGGTGAATATAAACCTC 1411
||.||||||.|||||.||.||||||.|||||||.|||.||||||.| ||
RBAM_023320__ 1359 TTATATGTTCAAAACTGCGATTGCAATTGGTAAGGGTAAATATATA--TC 1406
BSNT_03732___ 1412 A------CCAAGCATTGCCTTTGGATACTTCTGCATTTGATACCTTCAGA 1455
| ||| .||.|..|||..|||..| ||||||||||..||..|.
RBAM_023320__ 1407 AGGACATCCA---CTTCCGCTTGATTACAGC-GCATTTGATAAATTTCGT 1452
BSNT_03732___ 1456 AATTATTTCAGTCAATTTGGATTAGGAGTAAAAACAGGAATTGATCTACC 1505
.||||.||||||.||||.||.|||||.|||||||||||||||||.||.||
RBAM_023320__ 1453 TATTACTTCAGTGAATTCGGTTTAGGGGTAAAAACAGGAATTGACCTGCC 1502
BSNT_03732___ 1506 AAATGAAATGACGGGATATAAAGG---TACAAG-CAGATTATCTGGTTTC 1551
.||.|||...||.||||||...|| ||.||| ||| ||.||||||
RBAM_023320__ 1503 TAACGAAGCTACAGGATATGTGGGAACTAAAAGACAG----TCAGGTTTC 1548
BSNT_03732___ 1552 TTGCTTGATTTCGCCATTGGACAGTATGATACTTATACACCGCTGGAATT 1601
|||||||||||.||.||.||.||.|||||.||.||.||.|||||..||.|
RBAM_023320__ 1549 TTGCTTGATTTTGCGATCGGCCAATATGACACATACACTCCGCTTCAAAT 1598
BSNT_03732___ 1602 GGCTCAATATGTCTCCACCATAGCAAATGGTGGCTACCGCATGAAGCCTC 1651
||||||.|||||.||.|||||.||.|||||.|||||.||.||||||||.|
RBAM_023320__ 1599 GGCTCAGTATGTATCGACCATTGCTAATGGCGGCTATCGTATGAAGCCCC 1648
BSNT_03732___ 1652 AGCTTGTAAAGGAAGTCAGAGA---TTCAAATGCGAAAAAAGGGATCGGC 1698
|..|.||.||.|||||.|||.| |||| ||||||||.|||||.
RBAM_023320__ 1649 AAGTCGTGAAAGAAGTAAGAAAACCTTCA------AAAAAAGGTATCGGG 1692
BSNT_03732___ 1699 GCAGTCGTTGATTCTGTTCAGCCTGAAGTATTGAATAAAGTC--GATATG 1746
||.||||||||.||||||.|.||.|||||..||| |..||| ||||||
RBAM_023320__ 1693 GCCGTCGTTGAATCTGTTAATCCGGAAGTGATGA--ACCGTCTTGATATG 1740
BSNT_03732___ 1747 AAGAGTAGCTATATTGAAGAGGTCCAAGCCGGTTTTAGACGGGT------ 1790
|.|...||..|.||||||...||.|||...||.||||.||..||
RBAM_023320__ 1741 ACGGAAAGTGAAATTGAACGTGTTCAACAAGGCTTTAAACTTGTTATGAA 1790
BSNT_03732___ 1791 TGCCACTAAAGGGACAGCTGC-AGGTCAA--CTGGCTTCAGCATCGTATA 1837
||...||.|||||| |||| ||..||| .|.||| .|||
RBAM_023320__ 1791 TGGAGCTCAAGGGA---CTGCGAGAGCAAATTTTGCT---------AATA 1828
BSNT_03732___ 1838 AA---------CCAGCTGCAAAAACAGGAACAGCCCAATCATTTTACGAC 1878
|| ||.||.|..|||||.||||||||.|||.|.||.||.||.
RBAM_023320__ 1829 AAAGTTATCACCCTGCCGGTAAAACTGGAACAGCACAAGCTTTCTATGAT 1878
BSNT_03732___ 1879 GGACCGGAT-AAATCAAAAACAGGAACAGACACTTATAATACGACGCTTG 1927
||||| .|| |||||||.|||.||..|....||||||||.||.||..|.|
RBAM_023320__ 1879 GGACC-TATAAAATCAAGAACTGGTGCTTCTACTTATAACACAACTTTGG 1927
BSNT_03732___ 1928 TGGCTTATGCACCAGCTGACAATCCTGAGATTGCTATTTCTGTCGTAGTT 1977
||||||||||.||.||.||..|||||||..||||||||||.||.||.|||
RBAM_023320__ 1928 TGGCTTATGCTCCCGCAGATCATCCTGAAGTTGCTATTTCAGTAGTGGTT 1977
BSNT_03732___ 1978 CCTTGGACTTACATTG---ATTACAATCAAAGATACTCAATTACAAACGA 2024
||.|||.|||| || ||||.|||.|.||.||.|||||.||.||.||
RBAM_023320__ 1978 CCATGGGCTTA---TGAAAATTATAATGACAGGTATTCAATAACTAATGA 2024
BSNT_03732___ 2025 AATCGGCAGGGAAGTA---ATGGATAAATATTTTGAGCTGAAATCGAAGC 2071
.||.| ||||||.| .||||.|||||.||||||||||||..|||.|
RBAM_023320__ 2025 CATTG---GGGAAGCAGCTCTGGACAAATACTTTGAGCTGAAAAAGAAAC 2071
BSNT_03732___ 2072 AGGACAAAGAAG------ATACTCAGCAAAAGAATAAAGACAAAATTGAA 2115
|||||| ||||..||||.||.||..||||.||||||.|.
RBAM_023320__ 2072 ------AAGAAGATAATAATACGAAGCAGAAAAACGAAGATAAAATTCAG 2115
BSNT_03732___ 2116 GAAAATGCAGAAAAC------ACAACGTCTTCTGATAACTAA 2151
|||.|.||.|||||| |||| ||.|||||
RBAM_023320__ 2116 GAAGACGCTGAAAACGGCAATACAA---------ATCACTAA 2148
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