Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03718 and RBAM_023210
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:00
# Commandline: needle
# -asequence dna-align/BSNT_03718___yqgN.1.9828.seq
# -bsequence dna-align/RBAM_023210___yqgN.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03718___yqgN-RBAM_023210___yqgN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03718___yqgN-RBAM_023210___yqgN.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03718___yqgN
# 2: RBAM_023210___yqgN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 625
# Identity: 356/625 (57.0%)
# Similarity: 356/625 (57.0%)
# Gaps: 131/625 (21.0%)
# Score: 914.0
#
#
#=======================================
BSNT_03718___ 1 ATGAAATCACAATTAAGAAAAAAGACGCTGGAGGCACTATC-------TG 43
.|||||.|||||.|.|||| .|.||||| .|
RBAM_023210__ 1 GTGAAAGCACAAATCAGAA--------------CCGCTATCAAAGCAAAG 36
BSNT_03718___ 44 CTTTATCAAATGA-AGATATTCTTC---------AAAAAA---CGGAACG 80
||||.|.|.|||| |||.|.| |||||| ||.| |
RBAM_023210__ 37 CTTTCTGACATGACAGAAAGT----GAATGGGAGAAAAAATGCCGCA--G 80
BSNT_03718___ 81 TATGTAT-AAGTAC-TTGTTTTCTCTGCCGGAGTGGCAAAATGCCGGCAC 128
.|||..| || || .||||||||.|....||.|||.||.|.|||.||..
RBAM_023210__ 81 CATGCGTGAA--ACGCTGTTTTCTTTAAAAGAATGGAAACAGGCCCGCGT 128
BSNT_03718___ 129 CATTGCCGTCACTATTTCCAGAGGATTAGAGATACCGACGCGTCCTGTCA 178
.||.|||||.||.||.||.|.|.|..|.||.||.|||||.|..||..|.|
RBAM_023210__ 129 GATCGCCGTTACCATCTCGACACGCCTGGAAATTCCGACACAGCCGATTA 178
BSNT_03718___ 179 TTGAGCAGGCTTGGGAAGAAGGGAAACAAGTTTGCATCCCAAAATGCCAT 228
||||.|||||.|||.||||....||||||||.||.||||||||||||..|
RBAM_023210__ 179 TTGAACAGGCCTGGAAAGAGAAAAAACAAGTCTGTATCCCAAAATGCTTT 228
BSNT_03718___ 229 CCGGACACGAAGAA--AATGCAATTTCGCACATATCAGACTG---ATGAT 273
|||.|.||| |.| .|||.|.||.||.||||.| .||| |||||
RBAM_023210__ 229 CCGCAGACG--GGAGCGATGGAGTTCCGTACATTT---TCTGCGTATGAT 273
BSNT_03718___ 274 CAGCTCGAAACCGTGTATGCCGG---------ACTGCTC--GAGCCGGTA 312
|||||.||||||||.|||||.|| ||.|.|| ||||| |.
RBAM_023210__ 274 CAGCTGGAAACCGTATATGCGGGCCTCAGTGAACCGATCGAGAGCC--TG 321
BSNT_03718___ 313 ATTGAAAAAAC------AAAAGAAGTAAACCCATCACAAATTGA-CTTGA 355
|..||||||.| ||||| |.||||| ||||
RBAM_023210__ 322 ACGGAAAAAGCCGCCCAAAAAG---------------ACATTGACCTTG- 355
BSNT_03718___ 356 TGATCGTTCCAGGTGTTTGTTTTGATGTTAACGGG-----TTTAGGGTCG 400
||||.||.||.||.||...||||| |.|||| ||.||..|||
RBAM_023210__ 356 TGATTGTGCCCGGCGTGGCTTTTG-----ACCGGGAAGGCTTCAGAATCG 400
BSNT_03718___ 401 GCTTTGGAGGCGGCTATTATGATCGCTATTTAAGTGAATATGAAGGGAAG 450
|.|..||.||.||.|||||||||||.||..|....|..|||.||||....
RBAM_023210__ 401 GATACGGCGGAGGATATTATGATCGGTACCTCCCCGGTTATAAAGGCCGT 450
BSNT_03718___ 451 ACAGTCTCATTGCTTTTGGAGTGCCAGTTGTATG--CGCACGTACCCAGT 498
||.||.||..|.||.||.||.||||||.||...| |||| |.|||.||
RBAM_023210__ 451 ACCGTGTCGCTTCTCTTTGACTGCCAGCTGACAGACCGCA--TTCCCCGT 498
BSNT_03718___ 499 CTGCCGCATGACATCCCGGTACATAAGCTTGTAACAGAGGATCGGA---- 544
.||||.||.||.||.|||||..|||.|.|.||.||.|| |||.||
RBAM_023210__ 499 ATGCCCCACGATATTCCGGTCGATATGATCGTGACTGA--ATCTGAAACC 546
BSNT_03718___ 545 -----TTATTTCTTGTTTTTCATAA 564
|||.
RBAM_023210__ 547 ATCGCTTAA---------------- 555
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