Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03692 and RBAM_023060

See Amino acid alignment / Visit BSNT_03692 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:58
# Commandline: needle
#    -asequence dna-align/BSNT_03692___yqxL.1.9828.seq
#    -bsequence dna-align/RBAM_023060___yqxL.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03692___yqxL-RBAM_023060___yqxL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03692___yqxL-RBAM_023060___yqxL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03692___yqxL
# 2: RBAM_023060___yqxL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 986
# Identity:     684/986 (69.4%)
# Similarity:   684/986 (69.4%)
# Gaps:          67/986 ( 6.8%)
# Score: 2200.5
# 
#
#=======================================

BSNT_03692___      1 ATGAAGGCACATACGGGAAAGGATTGGTTTTGGTACCAAATGGGGCCTCA     50
                     |||||||.||||.||||...|||.|||.|.||||||||..|.||.||.||
RBAM_023060__      1 ATGAAGGTACATTCGGGTGCGGACTGGCTGTGGTACCAGCTCGGTCCGCA     50

BSNT_03692___     51 AGAAAGAAGTAAGGCAAGGGATCTAATCCATTTTTC----TCACTGGCCT     96
                     .||||.||  .||  |||.||...||...|||..||    |||||||||.
RBAM_023060__     51 TGAAAAAA--CAG--AAGCGAAAAAAATGATTCATCACAATCACTGGCCG     96

BSNT_03692___     97 CAGTGTGAAAAGTGGTTTGAAAATAACCATCACGTTAATTTTTTGCGAGT    146
                     ||.||.|||||||||||||||.||.|..||||..|.||.|||.||||...
RBAM_023060__     97 CAATGCGAAAAGTGGTTTGAACATGAAAATCATATAAACTTTCTGCGCTC    146

BSNT_03692___    147 AGATACAACTGAAACGGAA-AATGAAGCGGTATTTGGGTCGATTGTTTAT    195
                     ||||||||.|| |.|.||| |||||||||||.||.||.||..|..|.|||
RBAM_023060__    147 AGATACAAATG-ATCAGAATAATGAAGCGGTTTTCGGTTCTTTAATCTAT    195

BSNT_03692___    196 GATCAGGGGCTTGGTGAAGAAAAAGACCATACTGTTTTTCACTTTTATAT    245
                     .||||.||..|.|.|||.||||||.|||||||.||.||||||||||||||
RBAM_023060__    196 CATCAAGGATTAGATGATGAAAAAAACCATACCGTATTTCACTTTTATAT    245

BSNT_03692___    246 CACCAGACAATATTTTTTCACAATCAATTTTGACTTTTCGATTTTGAGAG    295
                     .||.|||.|.|..|||||.|||||.||||||||.||||||.|..||.|.|
RBAM_023060__    246 TACGAGAGACTTCTTTTTTACAATTAATTTTGATTTTTCGCTGCTGCGCG    295

BSNT_03692___    296 AGATTAAAGGCAAAGAAGTTGTC---CGGCAAATGGAAAGAGCGGACAAT    342
                      |..||||.|.||||.|  ||.|   |.|||.||..|||.....||.|||
RBAM_023060__    296 -GTGTAAAAGAAAAGCA--TGCCACACAGCAGATTCAAACCTGTGAAAAT    342

BSNT_03692___    343 GCGATAGAGGGGTTTTTAATTCTTCTCGGCGAACTAATGAATGCGTATTT    392
                     .||||.||.||.|||||..||||.||.||.||.||.||||||.|.|||.|
RBAM_023060__    343 CCGATTGAAGGCTTTTTTGTTCTGCTGGGAGAGCTGATGAATTCCTATCT    392

BSNT_03692___    393 AATCGGTGTTGATGAATTTGAAGTAAAGCTGAGAAAGCTCAGATGGCAAA    442
                     .|||||..|.||||||||||||||.||||.|.|.|.|||.|.||||||.|
RBAM_023060__    393 GATCGGACTGGATGAATTTGAAGTCAAGCAGCGGACGCTGAAATGGCAGA    442

BSNT_03692___    443 TTAAAGACGACAATAGCAAAAGCATTCT----AAACCGCGTCCATCTCCT    488
                     ||.|.||.|||||.||| ||||.|.|||    |||   .||.|||...||
RBAM_023060__    443 TTCATGATGACAACAGC-AAAGGAATCTTGGAAAA---TGTGCATAAACT    488

BSNT_03692___    489 GCGCCATGAACTGATGATTTGGAAAAATTTAATATTAAGCGCCAAAAAAA    538
                     |||||||||.|||.|.|||||||||....|.|.|.|..|.||.||||||.
RBAM_023060__    489 GCGCCATGAGCTGTTCATTTGGAAAGGCCTTACACTGGGGGCTAAAAAAG    538

BSNT_03692___    539 TTGAAATGGCGTTGAAAGAAACCTTTTTACCTCAAAATGA-AGGGAAAAA    587
                     |.||||||||.||.||||||.|.|||.|.||..||||||| |||.|.|||
RBAM_023060__    539 TGGAAATGGCTTTAAAAGAAGCTTTTCTCCCGAAAAATGACAGGCAGAAA    588

BSNT_03692___    588 GGATTA--TCAGCGGACA-CAACTGAAAATTGACAGGGGATTTTCATACA    634
                      |||||  ||||.|..|| |||   ||.||.||.||.|||.||.||||.|
RBAM_023060__    589 -GATTACCTCAGAGCTCATCAA---AAGATGGAAAGAGGAATTACATATA    634

BSNT_03692___    635 TCAGCGAATTTGAAGGGGAGCTTAACAATCTGCTGCATTCAGAGGAAGTC    684
                     |||..||.|||||...|||..|.|.||||||||||||..|.|||||||||
RBAM_023060__    635 TCAATGAGTTTGATCAGGAATTGAGCAATCTGCTGCACGCCGAGGAAGTC    684

BSNT_03692___    685 ATTACCTCACATAGGGGGAATGAAATTGTAAAAGCGCTGACCATTTTTAC    734
                     ||||||||.||.||.||.|||||||||||.|||||..||||.||.|||||
RBAM_023060__    685 ATTACCTCCCAAAGAGGAAATGAAATTGTGAAAGCCTTGACGATCTTTAC    734

BSNT_03692___    735 GACGCTTTTTACGCCGATAACAGCTCTGGGTGCCTTATGGGGGATGAACT    784
                     .||.||.|||||.|||||.||.||.||.||.||..|.|||||||||||||
RBAM_023060__    735 AACTCTCTTTACACCGATGACGGCGCTTGGAGCTCTCTGGGGGATGAACT    784

BSNT_03692___    785 TT--TCAGTGATGCCGGAACTGAATTGGAAATACGGATATCTCTTTTCCC    832
                     ||  |.|  .||||||||.||..||||||||||.|..|||.|.|.||||.
RBAM_023060__    785 TTGATAA--CATGCCGGAGCTTCATTGGAAATATGCGTATATTTGTTCCA    832

BSNT_03692___    833 T----CTTATTGATTGTCACATCTACAGTTCTGATCTATCTCTATTTGAG    878
                     |    ||.||| |||||   |||.||..|.|||||.|||.|.|||.||.|
RBAM_023060__    833 TCGTGCTCATT-ATTGT---ATCAACCCTGCTGATTTATATTTATCTGCG    878

BSNT_03692___    879 AAAAAAAGGCTGGACGGGAGATATGCTGCAGGAGCGGAAGAAGAAAAA--    926
                     ..|.|||||||||||.||.||.||..||..|||||  |..||.|||||  
RBAM_023060__    879 GCAGAAAGGCTGGACAGGGGACATTTTGAGGGAGC--ATCAAAAAAAATA    926

BSNT_03692___    927 ------GAAACCTCGAAAAAGGCGG--ACTCTATAG    954
                           ||||    |||||     |  ||.|||.  
RBAM_023060__    927 TTTGCGGAAA----GAAAA-----GAAACGCTAA--    951


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03692 and RBAM_023060

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
