Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03683 and RBAM_023030

See Amino acid alignment / Visit BSNT_03683 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:58
# Commandline: needle
#    -asequence dna-align/BSNT_03683___comGC.1.9828.seq
#    -bsequence dna-align/RBAM_023030___comGC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03683___comGC-RBAM_023030___comGC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03683___comGC-RBAM_023030___comGC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03683___comGC
# 2: RBAM_023030___comGC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 314
# Identity:     221/314 (70.4%)
# Similarity:   221/314 (70.4%)
# Gaps:          22/314 ( 7.0%)
# Score: 776.5
# 
#
#=======================================

BSNT_03683___      1 ---------ATGAATGAGAAA-------GGATTTACACTTGTTGAAATGT     34
                              .||||    |||       ||||||||..|..||||||||.
RBAM_023030__      1 GTGCTTCGTCTGAA----AAATCAAGATGGATTTACTTTAATTGAAATGC     46

BSNT_03683___     35 TAATCGTGCTCTTTATTATTTCGATTTTGCTTTTAATTACGATACCGAAC     84
                     |.|||||..|.|||||..||||.|||.||||||||||.||.||.||.|||
RBAM_023030__     47 TGATCGTTTTATTTATCGTTTCCATTCTGCTTTTAATCACCATTCCTAAC     96

BSNT_03683___     85 GTCACGAAACATAATCAAACCATTCAAAAAAAGGGCTGTGAAGGCTTACA    134
                     ||.||.|||||||||||||.||||||..|.||.|||||||||||..|.||
RBAM_023030__     97 GTTACAAAACATAATCAAAGCATTCAGCATAAAGGCTGTGAAGGACTGCA    146

BSNT_03683___    135 AAACATGGTTAAGGCACAAATGACTGCATTTGAGCTTGATCATGAAGGAC    184
                     .||.|||||.||.||.|||.||||.||.|..||..|.|||||||||||..
RBAM_023030__    147 GAATATGGTGAAAGCCCAAGTGACGGCGTACGAAATCGATCATGAAGGTA    196

BSNT_03683___    185 AAACTCCGAGCCTTG-CCGATTTACAGTCAGAGGGCTATGTGAAAAAGGA    233
                     |||..||| |...|| .|||||||||.||||||||.|||.|.||||||.|
RBAM_023030__    197 AAATGCCG-GATATGAACGATTTACAATCAGAGGGGTATATCAAAAAGAA    245

BSNT_03683___    234 TGCTGTCTGTCCAAATGGTAAGCGCATTATCATCACCGGCGGAGAAGTTA    283
                     |.|.|.|||.||.||||||||.|..||..|.||.|..|||||||||||||
RBAM_023030__    246 TACAGCCTGCCCGAATGGTAAACAGATCTTAATTAGTGGCGGAGAAGTTA    295

BSNT_03683___    284 AGGTTGAACATTAA    297
                     ..||||||||.|||
RBAM_023030__    296 CAGTTGAACAATAA    309


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