Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03682 and RBAM_023020
See
Amino acid alignment /
Visit
BSNT_03682 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:58
# Commandline: needle
# -asequence dna-align/BSNT_03682___comGD.1.9828.seq
# -bsequence dna-align/RBAM_023020___comGD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03682___comGD-RBAM_023020___comGD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03682___comGD-RBAM_023020___comGD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03682___comGD
# 2: RBAM_023020___comGD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 483
# Identity: 293/483 (60.7%)
# Similarity: 293/483 (60.7%)
# Gaps: 96/483 (19.9%)
# Score: 803.5
#
#
#=======================================
BSNT_03682___ 1 TTGAACATTAAATTAAACGAG----GAGAAGGGGTTTACCCTTTTAGAAA 46
|||||| |||.|.|.|.| ||.||.||||||||||||.|.||||
RBAM_023020__ 1 TTGAAC----AATAACAGGCGGACAGAAAATGGGTTTACCCTTCTTGAAA 46
BSNT_03682___ 47 GTTTGCTTGTGTTAAGCCTTGCCTCTATCCTCCTGA-----TTGCCGTCT 91
|..||.|||||||||||||.||.||..||||.|||| ||| |
RBAM_023020__ 47 GCCTGATTGTGTTAAGCCTGGCGTCCGTCCTGCTGACGGTTTTG-----T 91
BSNT_03682___ 92 TCACCACACTTCCTCCTGCTTATGACAATACA--------GCTGTCCG-- 131
||||.||..||||.||.|| .|||| ||.||.||
RBAM_023020__ 92 TCACGACGGTTCCGCCGGC--------CTACACCCACCTTGCCGTGCGGC 133
BSNT_03682___ 132 -----ACAGGCAGCAAGGCAGCTGAAAAATGATATTATGCTCACACAGCA 176
|||| || |||||..||||.||||||..|||..|.|||.|
RBAM_023020__ 134 AAAAAACAG-----AA--CAGCTCCAAAAAGATATTCAGCTTGCTCAGGA 176
BSNT_03682___ 177 GACTGCTATTTCCCGTC--AAC---AAAGAACAAAAA----TTCTCTTTC 217
.||.||||| || | ||| |||||||||||| ||.||||.|
RBAM_023020__ 177 AACGGCTAT----CG-CAGAACATAAAAGAACAAAAATCACTTTTCTTCC 221
BSNT_03682___ 218 ATAAAAAAG----AATATCAATT--AGTCATTGGTGATACGGTCATTGAA 261
||||.|| ||||..||.| ||||| ||.|..|.|.|..|.||.
RBAM_023020__ 222 --AAAAGAGCATAAATACAAACTGCAGTCA--GGCGGAAGGATTGTCGAG 267
BSNT_03682___ 262 CGTCCGTATGCAACGGGACTTTCT----ATAGAACTGCTGACATTA--AA 305
|||.|.|.| ||||..|| ||...|||..||||.||| ..
RBAM_023020__ 268 CGTTCTTTT-------GACTCGCTTCACATTACACTTGTGACTTTACCGG 310
BSNT_03682___ 306 AGACCGTTTGGAATTTAATGAGAAAGGGCACCCGAATGCAGGCGGAAAAA 355
|||.|.|| ||||||||.||.|||||.||.||||||.|.||.|||||.|
RBAM_023020__ 311 AGAGCCTT--GAATTTAACGAAAAAGGCCATCCGAATTCGGGAGGAAAGA 358
BSNT_03682___ 356 TACGAGTAAAAGGCCATGCC--GTT----TATGACATAACAGTTTATCTA 399
|.|.|.|.||..|| ||| ||| |||||.||.||.|||||..||
RBAM_023020__ 359 TTCAATTGAAGAGC---GCCGGGTTCACCTATGAGATCACGGTTTACTTA 405
BSNT_03682___ 400 GGGAGCGGGAGAGTCAATGTGGAGAGAAAATAA 432
||||||||.|..|||.|||...|..|.||||||
RBAM_023020__ 406 GGGAGCGGAAATGTCCATGCTAAACGGAAATAA 438
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.