Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03680 and RBAM_023000
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:58
# Commandline: needle
# -asequence dna-align/BSNT_03680___comGF.1.9828.seq
# -bsequence dna-align/RBAM_023000___comGF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03680___comGF-RBAM_023000___comGF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03680___comGF-RBAM_023000___comGF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03680___comGF
# 2: RBAM_023000___comGF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 553
# Identity: 245/553 (44.3%)
# Similarity: 245/553 (44.3%)
# Gaps: 221/553 (40.0%)
# Score: 590.5
#
#
#=======================================
BSNT_03680___ 0 -------------------------------------------------- 0
RBAM_023000__ 1 ATGGTGAGTATTACAAAGTGTGTACGGCTGACCGCAGCGAAAAAGAAATG 50
BSNT_03680___ 0 -------------------------------------------------- 0
RBAM_023000__ 51 TGCCTCAGCATTCTCAAAACAGACTGGCTTTACGCTTCTTAATGTTTTGT 100
BSNT_03680___ 1 -------------------TTGCTCATATCAGGATCGTTAGCTGCGATTT 31
|| ||.|||||||..|.||.|...||||||
RBAM_023000__ 101 TCTCCTTGGCAGTCTGTCTTT--TCCTATCAGGCACCTTGGGCCCGATTT 148
BSNT_03680___ 32 TCCATCTGTTTTTGTCTCGACAGCAGG-----AACATGACGGTTTCACAC 76
|.|||||||||||.|| |.|.|.|| ||| |.|||.|| |.||
RBAM_023000__ 149 TACATCTGTTTTTATC---AAACCGGGCCGATAAC--GGCGGATT-AGAC 192
BSNT_03680___ 77 AGC---AAGAATGGATGATTTCGATAGAACAGATGATGAATGAATGCAAG 123
||| .||.||..| |||.|..|..|.|||||.|||||.|||||.||.
RBAM_023000__ 193 AGCCGGGAGCATCAA--ATTGCCGTTCAGCAGATCATGAACGAATGTAAA 240
BSNT_03680___ 124 GAGTCACAGGCAGTTAAGACAGCCGA--GCATGGGA-GCGTGTTAATCTG 170
.||.|..||||.||.|||.|.||.|| || ||| |.|.|||| |
RBAM_023000__ 241 CAGGCTGAGGCTGTGAAGCCGGCGGACGGC---GGACGGGCGTTA----G 283
BSNT_03680___ 171 CA--CC----AATCTTTCCG--GGC-AGGACATCCGTTTCGAAATTTATC 211
|| || || ||| ||| |.||..|.|||||.||||||||||
RBAM_023000__ 284 CATGCCGGAAAA-----CCGGAGGCGAAGAAGTGCGTTTTGAAATTTATC 328
BSNT_03680___ 212 ATTCAATGATAAGAAAAAGAGTGGATGGCAAAGGGCATGTTCCGATTTTA 261
||...||||||||.||||||||..|.||.|||||.||.||.||||
RBAM_023000__ 329 ATAAGATGATAAGGAAAAGAGTAAACGGAAAAGGCCACGTGCCGA----- 373
BSNT_03680___ 262 GATCATATTACTGC------------CATGAA-AGCTGATATTGAAAATG 298
|.|||| |||.|| .||||||.|..||||.|
RBAM_023000__ 374 --------TCCTGCAAAACGCGGCATCATTAACGGCTGATGTGAAAAACG 415
BSNT_03680___ 299 G--TGTTGTTTTGCTGAAAATT-GAGAGT----------GAGGACCAAAA 335
| ||.|.|| ||| ||||.| .|||.|.|||
RBAM_023000__ 416 GCCTGCTCTT---------ATTAGAGATTTCAAGCGTTACAGGTCAAAA- 455
BSNT_03680___ 336 AGTGTATCAAACTGCTTTTCCAGTCTATTCGTATTTAGGAGGGGGGTGA- 384
|.||||..|.|...||||.||.||....|.|||...| |||||
RBAM_023000__ 456 ---GAATCAGGCGGTCATTCCGGTTTACAGCTCTTTTAAA----GGTGAT 498
BSNT_03680___ 384 --- 384
RBAM_023000__ 499 TAA 501
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