Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03680 and RBAM_023000

See Amino acid alignment / Visit BSNT_03680 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:58
# Commandline: needle
#    -asequence dna-align/BSNT_03680___comGF.1.9828.seq
#    -bsequence dna-align/RBAM_023000___comGF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03680___comGF-RBAM_023000___comGF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03680___comGF-RBAM_023000___comGF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03680___comGF
# 2: RBAM_023000___comGF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 553
# Identity:     245/553 (44.3%)
# Similarity:   245/553 (44.3%)
# Gaps:         221/553 (40.0%)
# Score: 590.5
# 
#
#=======================================

BSNT_03680___      0 --------------------------------------------------      0
                                                                       
RBAM_023000__      1 ATGGTGAGTATTACAAAGTGTGTACGGCTGACCGCAGCGAAAAAGAAATG     50

BSNT_03680___      0 --------------------------------------------------      0
                                                                       
RBAM_023000__     51 TGCCTCAGCATTCTCAAAACAGACTGGCTTTACGCTTCTTAATGTTTTGT    100

BSNT_03680___      1 -------------------TTGCTCATATCAGGATCGTTAGCTGCGATTT     31
                                        ||  ||.|||||||..|.||.|...||||||
RBAM_023000__    101 TCTCCTTGGCAGTCTGTCTTT--TCCTATCAGGCACCTTGGGCCCGATTT    148

BSNT_03680___     32 TCCATCTGTTTTTGTCTCGACAGCAGG-----AACATGACGGTTTCACAC     76
                     |.|||||||||||.||   |.|.|.||     |||  |.|||.|| |.||
RBAM_023000__    149 TACATCTGTTTTTATC---AAACCGGGCCGATAAC--GGCGGATT-AGAC    192

BSNT_03680___     77 AGC---AAGAATGGATGATTTCGATAGAACAGATGATGAATGAATGCAAG    123
                     |||   .||.||..|  |||.|..|..|.|||||.|||||.|||||.||.
RBAM_023000__    193 AGCCGGGAGCATCAA--ATTGCCGTTCAGCAGATCATGAACGAATGTAAA    240

BSNT_03680___    124 GAGTCACAGGCAGTTAAGACAGCCGA--GCATGGGA-GCGTGTTAATCTG    170
                     .||.|..||||.||.|||.|.||.||  ||   ||| |.|.||||    |
RBAM_023000__    241 CAGGCTGAGGCTGTGAAGCCGGCGGACGGC---GGACGGGCGTTA----G    283

BSNT_03680___    171 CA--CC----AATCTTTCCG--GGC-AGGACATCCGTTTCGAAATTTATC    211
                     ||  ||    ||     |||  ||| |.||..|.|||||.||||||||||
RBAM_023000__    284 CATGCCGGAAAA-----CCGGAGGCGAAGAAGTGCGTTTTGAAATTTATC    328

BSNT_03680___    212 ATTCAATGATAAGAAAAAGAGTGGATGGCAAAGGGCATGTTCCGATTTTA    261
                     ||...||||||||.||||||||..|.||.|||||.||.||.||||     
RBAM_023000__    329 ATAAGATGATAAGGAAAAGAGTAAACGGAAAAGGCCACGTGCCGA-----    373

BSNT_03680___    262 GATCATATTACTGC------------CATGAA-AGCTGATATTGAAAATG    298
                             |.||||            |||.|| .||||||.|..||||.|
RBAM_023000__    374 --------TCCTGCAAAACGCGGCATCATTAACGGCTGATGTGAAAAACG    415

BSNT_03680___    299 G--TGTTGTTTTGCTGAAAATT-GAGAGT----------GAGGACCAAAA    335
                     |  ||.|.||         ||| ||||.|          .|||.|.||| 
RBAM_023000__    416 GCCTGCTCTT---------ATTAGAGATTTCAAGCGTTACAGGTCAAAA-    455

BSNT_03680___    336 AGTGTATCAAACTGCTTTTCCAGTCTATTCGTATTTAGGAGGGGGGTGA-    384
                        |.||||..|.|...||||.||.||....|.|||...|    ||||| 
RBAM_023000__    456 ---GAATCAGGCGGTCATTCCGGTTTACAGCTCTTTTAAA----GGTGAT    498

BSNT_03680___    384 ---    384
                        
RBAM_023000__    499 TAA    501


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