Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03664 and RBAM_022880
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:57
# Commandline: needle
# -asequence dna-align/BSNT_03664___gcvPA.1.9828.seq
# -bsequence dna-align/RBAM_022880___gcvPA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03664___gcvPA-RBAM_022880___gcvPA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03664___gcvPA-RBAM_022880___gcvPA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03664___gcvPA
# 2: RBAM_022880___gcvPA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1381
# Identity: 1047/1381 (75.8%)
# Similarity: 1047/1381 (75.8%)
# Gaps: 68/1381 ( 4.9%)
# Score: 3861.5
#
#
#=======================================
BSNT_03664___ 1 ATGAAGCACCGTTATTTGCCCGCAACAGAAAAGGATAAACAGGAGATGCT 50
||||||||.||.|||||||||||.||||||.||||||||.|.||.||||
RBAM_022880__ 1 ATGAAGCATCGATATTTGCCCGCGACAGAACAGGATAAAAAAGAAATGC- 49
BSNT_03664___ 51 TGCTA-CTATCGGCG--TAAGCAGCATCGATGATTTATTTGCTGATATAC 97
||..| |.||||||| .||.|| ||.|||||..|.|||||.|||||.|
RBAM_022880__ 50 TGAAAGCCATCGGCGCAGAAACA--ATTGATGAACTGTTTGCCGATATTC 97
BSNT_03664___ 98 CGGAAAACGTCAAATATAAAAAAGAGTATCAAATCAAAAAAGCGAAATCA 147
|||||||.||....|.|.|||||||.||.|||||.||||||||.||||||
RBAM_022880__ 98 CGGAAAATGTACGGTTTCAAAAAGACTACCAAATTAAAAAAGCAAAATCA 147
BSNT_03664___ 148 GAAACAGAATTAACAAGAGAACTGACAAAGCTGGCCTCTAAAAAT----- 192
||||||||..|.||.|||||.|||||||||||.||..|.||||||
RBAM_022880__ 148 GAAACAGAGCTGACGAGAGAGCTGACAAAGCTTGCGGCGAAAAATAAAGA 197
BSNT_03664___ 193 ---TGTGATACCGTACAATACGCTTCTTTCTTAGGAGCGGGTGTATATGA 239
||| ||| |||.||.|||||..|.||.||.||.||.||.||
RBAM_022880__ 198 CGCTGT-------TAC-ATATGCATCTTTTCTGGGCGCAGGAGTGTACGA 239
BSNT_03664___ 240 CCACTATCAGCCTGTCATTGTGGATCATGTCATTTCGCGCTCTGAGTTTT 289
.|||||.|||||.||.||.||.||||||||.||.||.||.||.|||||||
RBAM_022880__ 240 TCACTACCAGCCGGTTATCGTCGATCATGTGATATCCCGATCAGAGTTTT 289
BSNT_03664___ 290 ATACCGCATATACGCCTTATCAGCCAGAGATTTCACAAGGAGAGCTCCAG 339
|.||.||||||||||||||.|||||.||.||.||||||||||||||.|||
RBAM_022880__ 290 ACACGGCATATACGCCTTACCAGCCTGAAATCTCACAAGGAGAGCTGCAG 339
BSNT_03664___ 340 GCTATTTTTGAATTCCAAACGATGATCTGTGAACTGACAGGCATGGATAT 389
||.|||||||||||.||||||||||||||||||.|.||.||.||||||||
RBAM_022880__ 340 GCGATTTTTGAATTTCAAACGATGATCTGTGAATTAACGGGAATGGATAT 389
BSNT_03664___ 390 CGCCAACTCCTCGATGTATGACGGCGGAACAGCCTTGGCGGAAGCAGCAA 439
|||.||||||||.|||||.|||||.|||||.||..||||||||||.||.|
RBAM_022880__ 390 CGCAAACTCCTCTATGTACGACGGGGGAACGGCGCTGGCGGAAGCGGCGA 439
BSNT_03664___ 440 TGCTTGCTTCAGGCCACACGAAAAAGAAAAAAATCGTTGTGTCAAAAACC 489
|||||||.||.||.||.||||||||||||||||||||..|.||...|.||
RBAM_022880__ 440 TGCTTGCGTCGGGACATACGAAAAAGAAAAAAATCGTCATTTCCGCAGCC 489
BSNT_03664___ 490 GTGCATCCTGAATCGCGAGAAGTGCTGAAAACGTACGCAAAAGGTCAGTA 539
||.|||||.||||||||.||.||..|||||||.||||||||.||.||.||
RBAM_022880__ 490 GTTCATCCGGAATCGCGGGATGTTTTGAAAACATACGCAAAGGGCCAATA 539
BSNT_03664___ 540 TATTGATGTTGTTGAAGTACCCGCTGCGG----ATGGCGTTACGGATCTT 585
||||||.|||||.||.||.||||| | |.|||||.||.||||||
RBAM_022880__ 540 TATTGAGGTTGTAGAGGTGCCCGC----GAAAAACGGCGTCACAGATCTT 585
BSNT_03664___ 586 GATGCATTGCGCCAAACCGTTTGCGA-GAACACAGCCGCAGTGATCGTTC 634
||.||||||...||..|||||||.|| ||| ||.|||||.||||||||.|
RBAM_022880__ 586 GAAGCATTGGAACATGCCGTTTGTGATGAA-ACGGCCGCCGTGATCGTCC 634
BSNT_03664___ 635 AGTACCCGAATTTTTTCGGCCGGATCGAGCCGCTAAAGGATATTGAGCCT 684
||||.|||||.||.|||||.|..|||||||||.|||||||.||||||||.
RBAM_022880__ 635 AGTATCCGAACTTCTTCGGACAAATCGAGCCGTTAAAGGACATTGAGCCG 684
BSNT_03664___ 685 ATCGCTCATCAAGGGAA-ATCCATGTTTATTGTTTCAGCTAACCCGCTTG 733
.||||.|||.||||.|| |.||| |.|.||||||||..|.||||||||.|
RBAM_022880__ 685 CTCGCACATAAAGGAAACAGCCA-GCTGATTGTTTCTTCAAACCCGCTCG 733
BSNT_03664___ 734 CGCTAGGTCTTCTCACTCCGCC--GGGCA-----AGTTTCAGTCTGACAT 776
||||.|||.||.|.||.||||| ||||| || ||||.||
RBAM_022880__ 734 CGCTCGGTATTTTGACACCGCCCGGGGCATACGGAG-------CTGATAT 776
BSNT_03664___ 777 CGTCGTCGGTGATGCGCAGCCTTTCGGCATTCCTTCAGCATACGGCGGCC 826
|||||||||.||.|||||||||||||||||.|||.|.||.|.||||||||
RBAM_022880__ 777 CGTCGTCGGGGACGCGCAGCCTTTCGGCATACCTGCGGCGTTCGGCGGCC 826
BSNT_03664___ 827 CGCATTGCGGCTTTTTTGCCGTTACTAAAAAATTAATGAGAAAGGTGCCG 876
||||.|||||||.||||||.||.||.||||||.|.|||||||||||.|||
RBAM_022880__ 827 CGCACTGCGGCTATTTTGCAGTAACGAAAAAACTGATGAGAAAGGTTCCG 876
BSNT_03664___ 877 GGCCGTCTCGTCGGACAAACGGAAGACGAAAACGGAAAAAGAGGCTTTGT 926
|||||.||.|||||.||||||||.||.||||||||...||||||.|||||
RBAM_022880__ 877 GGCCGGCTTGTCGGCCAAACGGAGGATGAAAACGGGCGAAGAGGTTTTGT 926
BSNT_03664___ 927 GCTTACCCTGCAAGCCAGGGAGCAGCATATCCGCCGAGATAAAGCAACAT 976
.||.||.||.||.||..|.||||||||||||.|..||||.|||||.||.|
RBAM_022880__ 927 TCTCACTCTTCAGGCGCGCGAGCAGCATATCAGAAGAGACAAAGCCACGT 976
BSNT_03664___ 977 CAAATATATGCTCGAACCAAGCTTTAAATGCGCTGGCAGCATCAGTGGCC 1026
|.||.||.||.||.||.||.||..|.|||||..|.||.||.||||..||.
RBAM_022880__ 977 CTAACATTTGTTCAAATCAGGCGCTGAATGCTTTAGCGGCTTCAGCCGCG 1026
BSNT_03664___ 1027 ATGACTGCTCTCGGAAAAAACGGCGTAAAAGATATAGCCCGCCAAAATCT 1076
|||||.||.|||||||||||||||||.|||||.||.||||||||||||.|
RBAM_022880__ 1027 ATGACGGCGCTCGGAAAAAACGGCGTCAAAGACATGGCCCGCCAAAATAT 1076
BSNT_03664___ 1077 CTTAAAAGCCAACTATGCAAAGCAAGAAGCAAAAAAAGCAGGTCTTAC-C 1125
.||.|||||..|.||.||.|..|...||||..|||||||.|| |||.| |
RBAM_022880__ 1077 ATTGAAAGCTGATTACGCGAGACGCCAAGCGGAAAAAGCCGG-CTTGCAC 1125
BSNT_03664___ 1126 GTTATGTTTGACGGGCCGATATTTAATGAATTTGTCATCAAACTGGATGA 1175
||....||||||||.|||||||||||||||||||.|.|||..|||.||..
RBAM_022880__ 1126 GTAGCATTTGACGGCCCGATATTTAATGAATTTGCCGTCAGGCTGAATCT 1175
BSNT_03664___ 1176 GCCGGTGAGAGCTGTGAA-CAA----GCGTTTGCTGGCAA-AAGGCATGA 1219
.||.||.| || ||| ||| |||..|.|| |||| |.|||||.|
RBAM_022880__ 1176 TCCCGTCA-AG----GAAGCAAACCGGCGGCTCCT-GCAAGACGGCATAA 1219
BSNT_03664___ 1220 TTGGCGGATATGATCTTGGG--TTGACGTATCCGGAGCTGGA-CTGCCAT 1266
|.||||||||||| |||.|| ||| ||||||||||.|||.| |.| |||
RBAM_022880__ 1220 TCGGCGGATATGA-CTTAGGCCTTG-CGTATCCGGAACTGAATCAG-CAT 1266
BSNT_03664___ 1267 ATGCTGATTGCTGTAACGGAGCTGAGAACAAAAGAAGAAATTGACGCACT 1316
|||||.|||||.||.||.||||||||||||||||||.|.||.||..|.||
RBAM_022880__ 1267 ATGCTCATTGCCGTCACAGAGCTGAGAACAAAAGAAAAGATCGATTCGCT 1316
BSNT_03664___ 1317 CATTCAGGAATTGGGGGATCGCCATGAGTAA 1347
.|||..|..|||||||||||..|||||.|||
RBAM_022880__ 1317 TATTGCGAGATTGGGGGATCAACATGAATAA 1347
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