Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03660 and RBAM_022850

See Amino acid alignment / Visit BSNT_03660 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:56
# Commandline: needle
#    -asequence dna-align/BSNT_03660___yqhM.1.9828.seq
#    -bsequence dna-align/RBAM_022850___yqhM.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03660___yqhM-RBAM_022850___yqhM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03660___yqhM-RBAM_022850___yqhM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03660___yqhM
# 2: RBAM_022850___yqhM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 843
# Identity:     676/843 (80.2%)
# Similarity:   676/843 (80.2%)
# Gaps:          12/843 ( 1.4%)
# Score: 2706.5
# 
#
#=======================================

BSNT_03660___      1 ATGCAAAAAGAAACTTGGCGGTTTATAGACTCAGGCAATGCAAGTCCTGC     50
                     |||.||||||||||.|||||||||||.||||||||.||||.|||.||.||
RBAM_022850__      1 ATGGAAAAAGAAACATGGCGGTTTATTGACTCAGGGAATGAAAGCCCGGC     50

BSNT_03660___     51 ATTCAATATGGCGCTTGATGAAGCGCTTTTATATTGGCACAGCGAAAAGA    100
                     |||.||.||||||||.|||||||||||||||||||||||||||.||||.|
RBAM_022850__     51 ATTTAACATGGCGCTGGATGAAGCGCTTTTATATTGGCACAGCCAAAAAA    100

BSNT_03660___    101 AAATCCCCCCGGTTATCCGTTTTTACGGCTGGAATCCGGCGACACTTTCT    150
                     ||||.||.|||||.||||||||||||||||||||||||||.||..|.|||
RBAM_022850__    101 AAATTCCTCCGGTGATCCGTTTTTACGGCTGGAATCCGGCAACTTTGTCT    150

BSNT_03660___    151 GTAGGGTATTTTCAAAATATTAAAAAGGAAATCAATTTTGAAGCAGTACA    200
                     ||.||||||||||||||||||||.||||||||.||.|||||.||||||||
RBAM_022850__    151 GTCGGGTATTTTCAAAATATTAAGAAGGAAATTAACTTTGACGCAGTACA    200

BSNT_03660___    201 TAAATATAATCTCGGATTCGTCAGACGCCCGACCGGCGGGAGAGGTGTGC    250
                     ||||.|....|||||.||.||||||.|.|||||.|||||..|.|||||.|
RBAM_022850__    201 TAAACACGGCCTCGGGTTTGTCAGAAGACCGACAGGCGGACGGGGTGTTC    250

BSNT_03660___    251 TTCACGATCAGGAACTGACATACAGCGTAATTGTTTCGGAAGAGCACCCC    300
                     |.||.|||.|.|||.||||||||||||||||.|||||.||.||.|||||.
RBAM_022850__    251 TGCATGATAAAGAATTGACATACAGCGTAATCGTTTCAGAGGATCACCCG    300

BSNT_03660___    301 GAGATGCCGGCGACTGTTACTGAGGCTTACCGGGTTATTTCAGAAGGCAT    350
                     ||.||||||||.||.||.||.|||||.||||||||.|||||||||||.||
RBAM_022850__    301 GAAATGCCGGCCACGGTGACAGAGGCGTACCGGGTGATTTCAGAAGGTAT    350

BSNT_03660___    351 ACTTCAAGGCTTTAGAAATCTCGGTCTGGACGCTTACTTTGCCATCCCGA    400
                     .||.||.||.||.|||||.||.||.||.||.||..|||||||.||.|||.
RBAM_022850__    351 TCTGCAGGGATTCAGAAACCTTGGACTTGATGCCAACTTTGCGATTCCGC    400

BSNT_03660___    401 GAACTGAAAAAGAAAAAGAAAGCTTAAAAAATCCGCGGTCATCTGTTTGT    450
                     ||||.||.|||||||||||||||||.|||||||||||.||.||.||.||.
RBAM_022850__    401 GAACGGAGAAAGAAAAAGAAAGCTTGAAAAATCCGCGCTCGTCCGTCTGC    450

BSNT_03660___    451 TTTGACGCGCCTTCGTGGTATGAGCTAGTGGTTGAGGGGCGCAAGGTGGC    500
                     |||||.|||||||||||||||||.||.||.||.||.||.||.||.||.||
RBAM_022850__    451 TTTGATGCGCCTTCGTGGTATGAACTGGTCGTCGAAGGACGGAAAGTTGC    500

BSNT_03660___    501 GGGAAGCGCGCAAACGAGACAAAAAGGCGTGATTCTTCAGCATGGCTCCA    550
                     .||||||||.||.||..|.|||||||||||.|||||||||||.||.||||
RBAM_022850__    501 CGGAAGCGCACAGACACGCCAAAAAGGCGTCATTCTTCAGCACGGTTCCA    550

BSNT_03660___    551 TTCTTCTTGATTTAGATGAGGACAAGCTGTTCGATCTGTTCTTATATCCA    600
                     |.||.|||||..|.||||||||.||||||||.||||||||.||||||||.
RBAM_022850__    551 TCCTGCTTGACATTGATGAGGATAAGCTGTTTGATCTGTTTTTATATCCG    600

BSNT_03660___    601 AGTGAAAGAGTAAGAGAGCGGATGCAGCGCAATTTCAAAAACAAAGCGGT    650
                     ||.||.|||||..|.|||||.||||||||.||||||||||||||.|||||
RBAM_022850__    601 AGCGACAGAGTCCGTGAGCGCATGCAGCGGAATTTCAAAAACAAGGCGGT    650

BSNT_03660___    651 TGCCATTAATGAACT---CACCGAAAAGCGGGTGACGATGGATGAGGCTC    697
                     .|||||.||.| .||   ||||||||  |||||.||||||||||||||..
RBAM_022850__    651 AGCCATCAACG-CCTTAGCACCGAAA--CGGGTAACGATGGATGAGGCCA    697

BSNT_03660___    698 GTAAAGCCTTTAAAGAAGGATTTGAAACAGGTCTTAACATTCATTTGGAG    747
                     |.|..||.|||||||..||.|||||...|||.||.|||||||||.|.|||
RBAM_022850__    698 GAATCGCTTTTAAAGCCGGTTTTGAGGAAGGGCTGAACATTCATCTTGAG    747

BSNT_03660___    748 CCATATGAACT---TTCTCAGGAAGAGCTTGGTTTTGTTCATCACTTGGC    794
                     ||.||...|||   .|||   ||||||||||..|||||..||.|..||||
RBAM_022850__    748 CCTTACACACTCACGTCT---GAAGAGCTTGCATTTGTCAATGAGCTGGC    794

BSNT_03660___    795 TGAAACAAAGTACGCTTCAGATGAATGGAATTATAAGCGGTAA    837
                     |||.||.||.|||||.||.||||||||||||||||||||.|.|
RBAM_022850__    795 TGAGACGAAATACGCGTCTGATGAATGGAATTATAAGCGCTGA    837


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