Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03656 and RBAM_022830
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:56
# Commandline: needle
# -asequence dna-align/BSNT_03656___yqhO.1.9828.seq
# -bsequence dna-align/RBAM_022830___yqhO.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03656___yqhO-RBAM_022830___yqhO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03656___yqhO-RBAM_022830___yqhO.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03656___yqhO
# 2: RBAM_022830___yqhO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 882
# Identity: 687/882 (77.9%)
# Similarity: 687/882 (77.9%)
# Gaps: 12/882 ( 1.4%)
# Score: 2659.0
#
#
#=======================================
BSNT_03656___ 1 ATGTATATTGACGGTGTTTTTTCCGGCGGAGGAGTAAAAGGCATTGCGCT 50
|||.|.||||||||.||.|||||.|||||.||..||||.||..|.|||||
RBAM_022830__ 1 ATGCAGATTGACGGCGTATTTTCGGGCGGGGGGATAAAGGGGGTGGCGCT 50
BSNT_03656___ 51 CGCAGGCGCTTATGAAGTGCTTGAGGAAAAAGGCTTCCGCTTTAAAAGAG 100
.||.|||||||||||||.|||.||.|||||.|||||.||||||.|||||.
RBAM_022830__ 51 TGCCGGCGCTTATGAAGCGCTGGAAGAAAAGGGCTTTCGCTTTGAAAGAC 100
BSNT_03656___ 101 TTGCGGGTACAAGCGCCGGCGCCATTATTGCCGCTTTCATTGCGTCAGGT 150
|.||.||.||||||||||||||.|||||||||||.||.||.||..|.||.
RBAM_022830__ 101 TCGCCGGAACAAGCGCCGGCGCAATTATTGCCGCATTTATCGCTGCGGGC 150
BSNT_03656___ 151 TACACCAGTAAGGA-----AATCCACGCTTTAATTGAAGAAGTGGACGGA 195
||.||.||.|..|| |.|||| |.||.||.||.||.||||||
RBAM_022830__ 151 TATACGAGCAGAGAGGTTCATTCCA-----TCATAGATGAGGTTGACGGA 195
BSNT_03656___ 196 GAGAAATTGCTGGATCAGAGGTACTCATTTCTCCC-CTTAAAGATGCTCC 244
..|.|||||||.||||||||.||||||||.||||| ||.||| ||.||.|
RBAM_022830__ 196 AGGCAATTGCTTGATCAGAGATACTCATTCCTCCCGCTGAAA-ATCCTGC 244
BSNT_03656___ 245 AGTGGGTGTCCATCTACTGGCGTCTTGGCTTATACAAAGGCGATACGATA 294
.|||||||||.||.||.|||||.||.||..||||||.||||||||.|.|.
RBAM_022830__ 245 GGTGGGTGTCGATATATTGGCGCCTCGGACTATACAGAGGCGATATGCTG 294
BSNT_03656___ 295 GAAAAATGGATTGCTGATCTGTTAAGAGCGAAAGGCATAAGGGTTTTCGG 344
||||||||||||||.|||...||||.||||||.|||||.|..|..|||||
RBAM_022830__ 295 GAAAAATGGATTGCGGATAAATTAAAAGCGAAGGGCATCATCGCGTTCGG 344
BSNT_03656___ 345 CGATTTACAGAAAGGGTCTCTGCGCCTTATTGCTTCTGATCTGACAAACG 394
||||||..|.|||||.||.||.||.||.||.|||||.||||||||.||||
RBAM_022830__ 345 CGATTTGAAAAAAGGCTCGCTCCGTCTCATCGCTTCAGATCTGACGAACG 394
BSNT_03656___ 395 GCACCATGATTGTTTTGCCGGACGATTTGGCCCGTTACGGGTTAAATCCC 444
|.||.|||||.||..|.||.||||||.|..||||.|||||.||||||||.
RBAM_022830__ 395 GAACGATGATCGTGCTTCCTGACGATCTTCCCCGCTACGGATTAAATCCG 444
BSNT_03656___ 445 GATATGTTCCCGGTTGCCAGAGCGGTCAGAATGAGCTGCAGCATTCCGTA 494
||.||||||||||||||||||||.|||||||||||||||||||||||.||
RBAM_022830__ 445 GAGATGTTCCCGGTTGCCAGAGCCGTCAGAATGAGCTGCAGCATTCCTTA 494
BSNT_03656___ 495 TTTTTTTGAACCGATAAAATTAAAAACGGACACAGGCACCGCCACGGTTG 544
|||||||||||||||||||.|.||.||.||.|.|||||||.|.|||||.|
RBAM_022830__ 495 TTTTTTTGAACCGATAAAACTGAAGACAGAAAAAGGCACCTCAACGGTCG 544
BSNT_03656___ 545 TCGACGGAGGTGTGTTAAGCAATTTCCCCATCTGGCTGTTTTCAAAGGAA 594
|.|||||.||.|||||||||||||||||.||.|||||||.||||||.|||
RBAM_022830__ 545 TTGACGGCGGCGTGTTAAGCAATTTCCCGATTTGGCTGTATTCAAAAGAA 594
BSNT_03656___ 595 AGAAAGCGCCCTGTGATCGGTGTGACGCTTGCGCCGCGTGAAAGAGAGCG 644
.|.||.||.||.||.|||||..|..|||||.||||....||||.||||||
RBAM_022830__ 595 CGCAAACGGCCGGTCATCGGAATTTCGCTTTCGCCCAACGAAAAAGAGCG 644
BSNT_03656___ 645 TCCGAAAAAAAATATCCGCAACGCTTTTGAACTGTTCGGCGCCCTGTTTG 694
.|||||||||...|||||||||||||||||.||||||||.||..||||||
RBAM_022830__ 645 CCCGAAAAAATCAATCCGCAACGCTTTTGAGCTGTTCGGGGCTTTGTTTG 694
BSNT_03656___ 695 AAACGATGAAGGATGCCCATGACGCAAGGCACATTGCATCACGCTATGAA 744
||||||||||.||.||.|||||.||.|||||.||.||..||...||.|||
RBAM_022830__ 695 AAACGATGAAAGACGCTCATGATGCCAGGCATATCGCGACAAAGTACGAA 744
BSNT_03656___ 745 CAAAATATCATTTTTCTCCCGGTTGATGGCGTAATGGCAACTGATTTTCA 794
||.|||||.||||||.|.|||||.||....||.|||||.||.||.|||||
RBAM_022830__ 745 CAGAATATTATTTTTATTCCGGTGGAACATGTGATGGCGACGGAGTTTCA 794
BSNT_03656___ 795 TTTAACACAACAAAAAAAACTAGCCCTGATTGAGCTAGGTAAAAGACGGA 844
|.|.||||..||||||||||||||.||.|||||||||||.|||||..|.|
RBAM_022830__ 795 TCTCACACCGCAAAAAAAACTAGCTCTCATTGAGCTAGGAAAAAGCAGAA 844
BSNT_03656___ 845 CAGAGCTGTTTTTAAAGCAGTGGACCTATTAA 876
||||||..|||||.|||||.||||.|||||||
RBAM_022830__ 845 CAGAGCAATTTTTGAAGCAATGGAGCTATTAA 876
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