Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03656 and RBAM_022830

See Amino acid alignment / Visit BSNT_03656 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:56
# Commandline: needle
#    -asequence dna-align/BSNT_03656___yqhO.1.9828.seq
#    -bsequence dna-align/RBAM_022830___yqhO.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03656___yqhO-RBAM_022830___yqhO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03656___yqhO-RBAM_022830___yqhO.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03656___yqhO
# 2: RBAM_022830___yqhO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 882
# Identity:     687/882 (77.9%)
# Similarity:   687/882 (77.9%)
# Gaps:          12/882 ( 1.4%)
# Score: 2659.0
# 
#
#=======================================

BSNT_03656___      1 ATGTATATTGACGGTGTTTTTTCCGGCGGAGGAGTAAAAGGCATTGCGCT     50
                     |||.|.||||||||.||.|||||.|||||.||..||||.||..|.|||||
RBAM_022830__      1 ATGCAGATTGACGGCGTATTTTCGGGCGGGGGGATAAAGGGGGTGGCGCT     50

BSNT_03656___     51 CGCAGGCGCTTATGAAGTGCTTGAGGAAAAAGGCTTCCGCTTTAAAAGAG    100
                     .||.|||||||||||||.|||.||.|||||.|||||.||||||.|||||.
RBAM_022830__     51 TGCCGGCGCTTATGAAGCGCTGGAAGAAAAGGGCTTTCGCTTTGAAAGAC    100

BSNT_03656___    101 TTGCGGGTACAAGCGCCGGCGCCATTATTGCCGCTTTCATTGCGTCAGGT    150
                     |.||.||.||||||||||||||.|||||||||||.||.||.||..|.||.
RBAM_022830__    101 TCGCCGGAACAAGCGCCGGCGCAATTATTGCCGCATTTATCGCTGCGGGC    150

BSNT_03656___    151 TACACCAGTAAGGA-----AATCCACGCTTTAATTGAAGAAGTGGACGGA    195
                     ||.||.||.|..||     |.||||     |.||.||.||.||.||||||
RBAM_022830__    151 TATACGAGCAGAGAGGTTCATTCCA-----TCATAGATGAGGTTGACGGA    195

BSNT_03656___    196 GAGAAATTGCTGGATCAGAGGTACTCATTTCTCCC-CTTAAAGATGCTCC    244
                     ..|.|||||||.||||||||.||||||||.||||| ||.||| ||.||.|
RBAM_022830__    196 AGGCAATTGCTTGATCAGAGATACTCATTCCTCCCGCTGAAA-ATCCTGC    244

BSNT_03656___    245 AGTGGGTGTCCATCTACTGGCGTCTTGGCTTATACAAAGGCGATACGATA    294
                     .|||||||||.||.||.|||||.||.||..||||||.||||||||.|.|.
RBAM_022830__    245 GGTGGGTGTCGATATATTGGCGCCTCGGACTATACAGAGGCGATATGCTG    294

BSNT_03656___    295 GAAAAATGGATTGCTGATCTGTTAAGAGCGAAAGGCATAAGGGTTTTCGG    344
                     ||||||||||||||.|||...||||.||||||.|||||.|..|..|||||
RBAM_022830__    295 GAAAAATGGATTGCGGATAAATTAAAAGCGAAGGGCATCATCGCGTTCGG    344

BSNT_03656___    345 CGATTTACAGAAAGGGTCTCTGCGCCTTATTGCTTCTGATCTGACAAACG    394
                     ||||||..|.|||||.||.||.||.||.||.|||||.||||||||.||||
RBAM_022830__    345 CGATTTGAAAAAAGGCTCGCTCCGTCTCATCGCTTCAGATCTGACGAACG    394

BSNT_03656___    395 GCACCATGATTGTTTTGCCGGACGATTTGGCCCGTTACGGGTTAAATCCC    444
                     |.||.|||||.||..|.||.||||||.|..||||.|||||.||||||||.
RBAM_022830__    395 GAACGATGATCGTGCTTCCTGACGATCTTCCCCGCTACGGATTAAATCCG    444

BSNT_03656___    445 GATATGTTCCCGGTTGCCAGAGCGGTCAGAATGAGCTGCAGCATTCCGTA    494
                     ||.||||||||||||||||||||.|||||||||||||||||||||||.||
RBAM_022830__    445 GAGATGTTCCCGGTTGCCAGAGCCGTCAGAATGAGCTGCAGCATTCCTTA    494

BSNT_03656___    495 TTTTTTTGAACCGATAAAATTAAAAACGGACACAGGCACCGCCACGGTTG    544
                     |||||||||||||||||||.|.||.||.||.|.|||||||.|.|||||.|
RBAM_022830__    495 TTTTTTTGAACCGATAAAACTGAAGACAGAAAAAGGCACCTCAACGGTCG    544

BSNT_03656___    545 TCGACGGAGGTGTGTTAAGCAATTTCCCCATCTGGCTGTTTTCAAAGGAA    594
                     |.|||||.||.|||||||||||||||||.||.|||||||.||||||.|||
RBAM_022830__    545 TTGACGGCGGCGTGTTAAGCAATTTCCCGATTTGGCTGTATTCAAAAGAA    594

BSNT_03656___    595 AGAAAGCGCCCTGTGATCGGTGTGACGCTTGCGCCGCGTGAAAGAGAGCG    644
                     .|.||.||.||.||.|||||..|..|||||.||||....||||.||||||
RBAM_022830__    595 CGCAAACGGCCGGTCATCGGAATTTCGCTTTCGCCCAACGAAAAAGAGCG    644

BSNT_03656___    645 TCCGAAAAAAAATATCCGCAACGCTTTTGAACTGTTCGGCGCCCTGTTTG    694
                     .|||||||||...|||||||||||||||||.||||||||.||..||||||
RBAM_022830__    645 CCCGAAAAAATCAATCCGCAACGCTTTTGAGCTGTTCGGGGCTTTGTTTG    694

BSNT_03656___    695 AAACGATGAAGGATGCCCATGACGCAAGGCACATTGCATCACGCTATGAA    744
                     ||||||||||.||.||.|||||.||.|||||.||.||..||...||.|||
RBAM_022830__    695 AAACGATGAAAGACGCTCATGATGCCAGGCATATCGCGACAAAGTACGAA    744

BSNT_03656___    745 CAAAATATCATTTTTCTCCCGGTTGATGGCGTAATGGCAACTGATTTTCA    794
                     ||.|||||.||||||.|.|||||.||....||.|||||.||.||.|||||
RBAM_022830__    745 CAGAATATTATTTTTATTCCGGTGGAACATGTGATGGCGACGGAGTTTCA    794

BSNT_03656___    795 TTTAACACAACAAAAAAAACTAGCCCTGATTGAGCTAGGTAAAAGACGGA    844
                     |.|.||||..||||||||||||||.||.|||||||||||.|||||..|.|
RBAM_022830__    795 TCTCACACCGCAAAAAAAACTAGCTCTCATTGAGCTAGGAAAAAGCAGAA    844

BSNT_03656___    845 CAGAGCTGTTTTTAAAGCAGTGGACCTATTAA    876
                     ||||||..|||||.|||||.||||.|||||||
RBAM_022830__    845 CAGAGCAATTTTTGAAGCAATGGAGCTATTAA    876


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