Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03653 and RBAM_022800
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:56
# Commandline: needle
# -asequence dna-align/BSNT_03653___yqhR.1.9828.seq
# -bsequence dna-align/RBAM_022800___yqhR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03653___yqhR-RBAM_022800___yqhR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03653___yqhR-RBAM_022800___yqhR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03653___yqhR
# 2: RBAM_022800___yqhR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 551
# Identity: 393/551 (71.3%)
# Similarity: 393/551 (71.3%)
# Gaps: 34/551 ( 6.2%)
# Score: 1341.5
#
#
#=======================================
BSNT_03653___ 1 ATGATGACTAGCGAAAAAGATACAGAACAAAATGAAGAATTGAATGAGAA 50
|||||.|||||||||.||.|||||| |.|||||| ||..||||
RBAM_022800__ 1 ---ATGACAAGCGAAAAACATTCAGAAC---AGGAAGAA---AAAAAGAA 41
BSNT_03653___ 51 GC---------AAAAGCCGCCTGTTTCAATGGCCGGCAG-GGTGGCGGCA 90
|| |..|||.||||||||||.|..||||||| ..|.||||.|
RBAM_022800__ 42 GCAGGATGATGATCAGCAGCCTGTTTCATTTACCGGCAGAATTTGCGGTA 91
BSNT_03653___ 91 ACAGGTTTTTGCGGAGGCGTACTTTGGAGTTTCGTTGCTTATATCGCATA 140
.| ||.|||..|||.||.|||.||||||||||..|.|..|||.|||..||
RBAM_022800__ 92 TC-GGATTTGCCGGCGGTGTATTTTGGAGTTTGATCGGCTATCTCGGGTA 140
BSNT_03653___ 141 TTTGTTTCATTTTTCCGAAATCAGCCCGAATATGATATTGCAGCCGTTTG 190
|.|.|||||||||||.||.||||||||.||.|||||..|.|||||||||.
RBAM_022800__ 141 TGTCTTTCATTTTTCAGAGATCAGCCCCAACATGATTCTTCAGCCGTTTA 190
BSNT_03653___ 191 TACTCGGAGAGTGGAAAAAACATGGGCTGGGAACGGTAATCAGCATCATT 240
|..|||||||.|||||||||||..||||.||.|||.|..||||||||.||
RBAM_022800__ 191 TGATCGGAGAATGGAAAAAACAATGGCTCGGCACGATGGTCAGCATCGTT 240
BSNT_03653___ 241 TTGATTGGAGTAATTTCAATTGGCGCAGCATTTCTTTATTT--TCTTCTA 288
.|.||.|||.|.||||||||||.||..||.|||.||||||| |||.|
RBAM_022800__ 241 GTCATCGGATTCATTTCAATTGCCGGGGCGTTTATTTATTTCGTCTGC-- 288
BSNT_03653___ 289 TTGAAACGTTTAAAAACAATGTGGCCGGGTATTTTATACGGCTTGGTGCT 338
.||||.|||||.|||||.|||||||||||.||..|.||||||.|..|..|
RBAM_022800__ 289 CTGAAGCGTTTTAAAACCATGTGGCCGGGGATGGTGTACGGCGTCATTTT 338
BSNT_03653___ 339 TTGGCTGCTCGTGTTTTTTGTT-TTTAATCCGATTTTTCCAGATGTGCGC 387
.||| ||..||..||||||.|| ||.|||||||||||...|||||||...
RBAM_022800__ 339 ATGG-TGTGCGGTTTTTTTCTTATTCAATCCGATTTTCGAAGATGTGAAA 387
BSNT_03653___ 388 ACGGTGACCGAACTGACATCAGATACAATTATTACGACCATTTGCATTTA 437
.|.||.||.|||.|||.||||||||||||..|.|||||..|||||.||||
RBAM_022800__ 388 TCCGTCACTGAATTGAAATCAGATACAATCGTGACGACGCTTTGCCTTTA 437
BSNT_03653___ 438 TTTGCTTTACGGGCTGTTTGTCGGGTATTCCATTTCATTTGAATACAATG 487
..|.||.|||||..||||||||||.||.||.|||||.||..|.|||||||
RBAM_022800__ 438 CATTCTGTACGGTTTGTTTGTCGGCTACTCAATTTCCTTCAACTACAATG 487
BSNT_03653___ 488 AGCTGAATTCGGAAAAGCTTGCACGTGCGC-TGGGAATGCATAGAGAATA 536
|.||.|..||.||.|||||||||.|.|||| |||.|| || ||.||
RBAM_022800__ 488 AACTTACGTCAGACAAGCTTGCAAGGGCGCTTGGCAA--CA-AGTGA--- 531
BSNT_03653___ 537 G 537
RBAM_022800__ 531 - 531
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