Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03648 and RBAM_022760

See Amino acid alignment / Visit BSNT_03648 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:55
# Commandline: needle
#    -asequence dna-align/BSNT_03648___spoIIIAA.1.9828.seq
#    -bsequence dna-align/RBAM_022760___spoIIIAA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03648___spoIIIAA-RBAM_022760___spoIIIAA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03648___spoIIIAA-RBAM_022760___spoIIIAA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03648___spoIIIAA
# 2: RBAM_022760___spoIIIAA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 945
# Identity:     692/945 (73.2%)
# Similarity:   692/945 (73.2%)
# Gaps:          42/945 ( 4.4%)
# Score: 2424.0
# 
#
#=======================================

BSNT_03648___      1 TTGAATGAAATCGCTGAGGTTCTCCCTGATTCCATGAAAAACGCCCTTTC     50
                     ||||||||.||..|.||||||||||||||.|...|||.|.|.|||.|.||
RBAM_022760__      1 TTGAATGAGATTACAGAGGTTCTCCCTGAATTATTGAGAGATGCCATCTC     50

BSNT_03648___     51 TGAAATACCGGAACAA-CAATGGCTGGAAATCGAAGAAGTCAGAATTCGG     99
                     .|...|.||.|||.|| |.| |||.|||.|..||||||.|||||||.||.
RBAM_022760__     51 CGCCGTGCCCGAAGAAGCGA-GGCGGGATACAGAAGAAATCAGAATCCGC     99

BSNT_03648___    100 ATCAACCGCCCTGTTGAATTGATTCGAAGAGGACAACCTGTTTATTTGTC    149
                     .||.||.|.||.||||||.||||.|.||.||||||||||.|.||||||||
RBAM_022760__    100 GTCGACAGGCCGGTTGAACTGATCCAAAAAGGACAACCTTTGTATTTGTC    149

BSNT_03648___    150 CTATGCGGGCACGGCCGAGGATGCCCATCTGATCCTGAGCCGGCTCAGCA    199
                     .||||...|.|||||||..||.||.||.||||||||.|||||||||||||
RBAM_022760__    150 ATATGTCTGTACGGCCGGCGACGCACAGCTGATCCTCAGCCGGCTCAGCA    199

BSNT_03648___    200 ACTATAGTATGTATACACTTGAAGAAGAGCTGAAGAAAGGGTATGTCACG    249
                     |.||.||||||||.||.||.||||||||||||||.|||||.|||.||||.
RBAM_022760__    200 ATTACAGTATGTACACGCTGGAAGAAGAGCTGAAAAAAGGATATATCACA    249

BSNT_03648___    250 ATCAGAGGCGGCCACAGAGTCGGACTGGCGGGCAGAGTCATTACG--GAA    297
                     ||||||||.||||||.|.||.||.|||||.||.||||||||  ||  |||
RBAM_022760__    250 ATCAGAGGAGGCCACCGCGTGGGGCTGGCCGGAAGAGTCAT--CGTCGAA    297

BSNT_03648___    298 AACGGAGGTGTGAAAGGCCTCCGTGACATCGCATCTTTTAATATACGAAT    347
                     |||||||..||.|||||.|||||.||.||..|.|||||||||||.|||||
RBAM_022760__    298 AACGGAGCCGTCAAAGGACTCCGGGATATTACTTCTTTTAATATCCGAAT    347

BSNT_03648___    348 TGCCCGGCAAAAGCTGGGGATTGCGGAGCCGCTGCTTCCATACTTATATC    397
                     .||||||.|.||||||||.||.||.||.|||||..||||.|.|||||...
RBAM_022760__    348 CGCCCGGGAGAAGCTGGGAATCGCAGAACCGCTCATTCCTTTCTTATGGA    397

BSNT_03648___    398 AAAACAGCTGGCTGAATACGCTGATTATCGGACCGCCCCAAACCGGCAAA    447
                     ||.|.|.||||||||||||||||||.|||||.||.||.|||||.||.|||
RBAM_022760__    398 AAGAAAACTGGCTGAATACGCTGATCATCGGTCCTCCGCAAACGGGGAAA    447

BSNT_03648___    448 ACAACACTT-CTCCGGGACCTTGCGAGGCTCTCAAGCACCGGCAAAAAAA    496
                     ||.|| ||| ||.||.||..|.||..||||.||.||||||||...||||.
RBAM_022760__    448 ACGAC-CTTGCTTCGTGATTTGGCCCGGCTTTCCAGCACCGGATCAAAAC    496

BSNT_03648___    497 ACATGCTGCCCG----TAAAGACAGGGATCGTCGATGAACGGTCAGAGAT    542
                     .|||    ||||    .|||||||||.|||||.||||||||.||.||.||
RBAM_022760__    497 GCAT----CCCGGCAAAAAAGACAGGTATCGTAGATGAACGTTCGGAAAT    542

BSNT_03648___    543 TGCCGGATGTCTTCGCGGTATTCCGCAGCATCAATTT-GGTCAGAGAATT    591
                     ||||||.||.||.||.||.|||||.||||| ||.||| ||.|..|||||.
RBAM_022760__    543 TGCCGGCTGCCTGCGGGGCATTCCCCAGCA-CAGTTTCGGCCGCAGAATC    591

BSNT_03648___    592 GACGTGTTAGACGCCTGTCCAAAAGCTGAAGGGCTGATGATGATGATTCG    641
                     ||.||..|.||.||||||||.||.||.|||||||||||||||||||||||
RBAM_022760__    592 GATGTCCTTGATGCCTGTCCGAAGGCGGAAGGGCTGATGATGATGATTCG    641

BSNT_03648___    642 ATCCATGAGCCCTGAGGTGATGATTGTCGATGAAATCGGGCGTATGGAAG    691
                     .||.|||||.|||||.||.||.|||||.||||||||||||.|.|||||||
RBAM_022760__    642 CTCTATGAGTCCTGATGTCATAATTGTGGATGAAATCGGGAGAATGGAAG    691

BSNT_03648___    692 ATACAGATGCACTTCTGGAGGCGCTGCATGCCGGTGTTTCAGTAATCGTA    741
                     |..||.|.||.||.|||||||||||.|||||.||.||.||.||.||||||
RBAM_022760__    692 ACTCACAAGCGCTGCTGGAGGCGCTTCATGCGGGCGTATCCGTTATCGTA    741

BSNT_03648___    742 TCGGCGCATGGCTGGAGTATATCCGACCTGATGAAGCGGCCTTCATTGAA    791
                     ||.|||||.||.|||...||....|||.||.|.|||.||||.||..||||
RBAM_022760__    742 TCTGCGCACGGGTGGGACATGAAAGACTTGGTCAAGAGGCCGTCGCTGAA    791

BSNT_03648___    792 ---GCGTTTGTGGGAAGAAAGAGCCTTTGACCGCTATTTGGAATTATCAA    838
                        ||   |.|||||.||||..|..||||||||.|||.|.|||.|.||||
RBAM_022760__    792 AATGC---TTTGGGAGGAAAACGTGTTTGACCGATATGTTGAACTGTCAA    838

BSNT_03648___    839 G----AGCAAAAGGGCCGGGCACAGTGAGCCAAATTTATGACAAAGAC--    882
                     |    .||    ||.|||||.||..|.|||...||.||.|..||.|||  
RBAM_022760__    839 GGCGCCGC----GGTCCGGGAACGATCAGCAGGATGTACGGAAAGGACGG    884

BSNT_03648___    883 GGAAATGTGCTGTCTAGGACGACGG---GCGTGAAAACATGCTGA    924
                     ||||    .||||...|.|.| |.|   ||||||..|||||||||
RBAM_022760__    885 GGAA----CCTGTTCCGCATG-CTGAAAGCGTGATGACATGCTGA    924


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03648 and RBAM_022760

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
