Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03617 and RBAM_022590

See Amino acid alignment / Visit BSNT_03617 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:53
# Commandline: needle
#    -asequence dna-align/BSNT_03617.1.9828.seq
#    -bsequence dna-align/RBAM_022590___yqxC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03617-RBAM_022590___yqxC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03617-RBAM_022590___yqxC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03617
# 2: RBAM_022590___yqxC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 862
# Identity:     563/862 (65.3%)
# Similarity:   563/862 (65.3%)
# Gaps:         149/862 (17.3%)
# Score: 2104.0
# 
#
#=======================================

BSNT_03617         0 --------------------------------------------------      0
                                                                       
RBAM_022590__      1 ATGACAGCAAAAAAAGAACGATTAGATGTACTTCTTGTAGAAAAAGGCCT     50

BSNT_03617         0 --------------------------------------------------      0
                                                                       
RBAM_022590__     51 TGCGGAAACGCGGGAAAAAGCGAAACGCGCCATTATGGCGGGCATCGTAT    100

BSNT_03617         1 -----------------TTGGACAAGCCTGGAGAAAAAATTGACCGCGAC     33
                                      ||||||||.||.||.||||||||.|.|||.||.
RBAM_022590__    101 ACTCAAATGAAAACCGATTGGACAAACCGGGTGAAAAAATCGCCCGGGAT    150

BSNT_03617        34 CTTCCGTTAACCGTTAAAGGAAACCCGCTGAGGTATGTGAGCAGGGGCGG     83
                     |||||||||||.||.|||||||||||.||.|..||.||.|||||.|||||
RBAM_022590__    151 CTTCCGTTAACGGTAAAAGGAAACCCTCTTAAATACGTCAGCAGAGGCGG    200

BSNT_03617        84 CTTAAAGCTCGAAAAAGCGTTGAAGGAATTTCCCGTCTCTGTCAAGGATA    133
                     .||||||||.||||||||..||.|.|..|||||.|||||.||.||.|..|
RBAM_022590__    201 ATTAAAGCTTGAAAAAGCTCTGGAAGTGTTTCCTGTCTCGGTAAAAGGCA    250

BSNT_03617       134 AAATTATGATTGATATTGGCTCCTCCACCGGCGGTTTTACGGACTGCGCT    183
                     |||..||||||||.||.|||||.||.||.||.||.||.|||||.|||||.
RBAM_022590__    251 AAACGATGATTGACATCGGCTCGTCTACAGGGGGATTCACGGATTGCGCC    300

BSNT_03617       184 TTGCAAAATGGAGCTAAACAGTCATACGCTGTGGATGTAGGCTATAATCA    233
                     .|.|||||.|||||..|.|.|||.|||||.||||||||.|||||||||||
RBAM_022590__    301 CTCCAAAACGGAGCCGAGCGGTCCTACGCAGTGGATGTCGGCTATAATCA    350

BSNT_03617       234 GCTTGCGTGGAAGCTCAGACAGGATGAACGGGTCGTCGTGATGGAACGGA    283
                     ||||||.|||||||||||||||||.||..||||||||||.||||||||||
RBAM_022590__    351 GCTTGCTTGGAAGCTCAGACAGGACGAGAGGGTCGTCGTCATGGAACGGA    400

BSNT_03617       284 CGAACTTTCGTTATGCAACACCGGCAGACTTTACAAAGGGCATGCCGGAG    333
                     ||||.||.||.|||.|....||..|.||.||.|||.||||..|||||||.
RBAM_022590__    401 CGAATTTCCGCTATTCCGAGCCTTCCGATTTCACAGAGGGTTTGCCGGAA    450

BSNT_03617       334 TTTGCCACAATTGATGTGTCCTTTATTTCACTGCGGCTCATCCTGCCTGT    383
                     |||||.|||||.|||||.||.||.||.|||||.||.|||||.|||||.||
RBAM_022590__    451 TTTGCGACAATCGATGTTTCTTTCATCTCACTCCGCCTCATTCTGCCGGT    500

BSNT_03617       384 CCTAAGGACTTTGCTCGTACCGGGCAGCGACTGCATGGCTCTAGTTAAGC    433
                     ..|||..||..||||.||||||||.|||||.||.||.||.||.||.||||
RBAM_022590__    501 TTTAAAAACGCTGCTTGTACCGGGGAGCGATTGTATCGCACTGGTGAAGC    550

BSNT_03617       434 CTCAGTTTGAAGCGGGACGGGAATCCGTCGGCAAAAAAGGGATTGTCAGA    483
                     |.||.||||||||.|||||||||||||||||.||||||||.|||||||||
RBAM_022590__    551 CGCAATTTGAAGCCGGACGGGAATCCGTCGGAAAAAAAGGCATTGTCAGA    600

BSNT_03617       484 GATCCTAAAGTGCATGCTGATGTGCTCAAGCGAATG-ATCAGTTTTTCTG    532
                     |||||....||.|||.||||.||.|||...||.||| ||||.||    ||
RBAM_022590__    601 GATCCCGGCGTTCATACTGACGTTCTCCGCCGCATGAATCAATT----TG    646

BSNT_03617       533 CCG---CTGAAGGCTATATATGT-AAAGGCTTGTCATTTTCTCCAATCAC    578
                     |||   |||||||.||||.| || |||||..||||.||.||.||.||.||
RBAM_022590__    647 CCGCTTCTGAAGGATATACA-GTGAAAGGACTGTCCTTCTCACCGATTAC    695

BSNT_03617       579 TGGAGGAGACGGAAATATTGAGTTTCTCCTTCATTTGCATTGGCCGGGAG    628
                     .||.||||||||.||||||||||||||.|||||||||.|.|||...||||
RBAM_022590__    696 AGGGGGAGACGGCAATATTGAGTTTCTGCTTCATTTGGAATGGGGCGGAG    745

BSNT_03617       629 AGGGACAGG--ATGGCCAGGAGCTGCCGGAAGAAGAGAT---------CA    667
                     | .||| ||  |.|||...||..|||||||||||||.||         |.
RBAM_022590__    746 A-AGAC-GGAAACGGCGCTGAATTGCCGGAAGAAGACATTCTCCGTACCG    793

BSNT_03617       668 TGCGCGTTGTAGAAGAAGCACATAAGACGTTAAAAGAAAAAAAAGCAGAT    717
                     |.|||         |||||||||.||||.|||||||..|||||..|||||
RBAM_022590__    794 TCCGC---------GAAGCACATGAGACATTAAAAGCCAAAAAGACAGAT    834

BSNT_03617       718 GTACCGGAATAA    729
                     ||||||||||||
RBAM_022590__    835 GTACCGGAATAA    846


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