Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02911 and RBAM_022540

See Amino acid alignment / Visit BSNT_02911 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:47
# Commandline: needle
#    -asequence dna-align/BSNT_02911___yncD.1.9828.seq
#    -bsequence dna-align/RBAM_022540___yncD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02911___yncD-RBAM_022540___yncD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02911___yncD-RBAM_022540___yncD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02911___yncD
# 2: RBAM_022540___yncD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1190
# Identity:     944/1190 (79.3%)
# Similarity:   944/1190 (79.3%)
# Gaps:          10/1190 ( 0.8%)
# Score: 3725.0
# 
#
#=======================================

BSNT_02911___      1 TTGATGATAAAGCTTTGCCGAGAAGTTTGGATCGAAGTCAATCTTGATGC     50
                        ||||.|||.||||||||.|||||||||||.|||||..|.||||||||
RBAM_022540__      1 ---ATGAAAAAACTTTGCCGGGAAGTTTGGATTGAAGTTGACCTTGATGC     47

BSNT_02911___     51 CGTTAAAAAGAATTTGCGAGCGATCCGCCGTCATATTCCACATAAGAGCA    100
                     ..|.||||||||..|.||.|||||||||||.||||||||..|||.|...|
RBAM_022540__     48 GATAAAAAAGAACGTACGGGCGATCCGCCGCCATATTCCGAATACGTCTA     97

BSNT_02911___    101 AAATTATGGCTGTCGTAAAAGCGAACGGTTATGGTCACGGGTCTATAGAA    150
                     ||||||||||.||||||||||||||||.||||||.|||||.|||.|.|||
RBAM_022540__     98 AAATTATGGCCGTCGTAAAAGCGAACGCTTATGGCCACGGCTCTGTGGAA    147

BSNT_02911___    151 GTGGCACGCCATGCACTGGAACACGGGGCGAGTGAGCTTGCTGTTGCCAG    200
                     ||.||.||.||.|||||||||..|||||||||.|||||.|||||.|||||
RBAM_022540__    148 GTAGCGCGGCAGGCACTGGAAAGCGGGGCGAGCGAGCTCGCTGTCGCCAG    197

BSNT_02911___    201 TGTGGAGGAAGGAATCGTTTTACGTAAAGCTGGGATTACAGCACCTATCC    250
                     .||.||.||.|||||.||.|||||.|.|||.||.|||||.||||||||.|
RBAM_022540__    198 CGTCGAAGAGGGAATTGTGTTACGGAGAGCGGGAATTACGGCACCTATTC    247

BSNT_02911___    251 TTGTGCTTGGTTTTACATCCCTTAGTTGTGTAAAGAAGTCAGCAGCTTGG    300
                     |||||||.||.||.|||.|.||.||.|||||.||.||.||.||.|.||||
RBAM_022540__    248 TTGTGCTCGGCTTCACAGCTCTCAGCTGTGTGAAAAAATCTGCCGTTTGG    297

BSNT_02911___    301 AATATAACATTATCAGCATTCCAGGTTGATTGGATGAAAGAAGC-AAACG    349
                     ||.||||||||||||||.||.|||||....|||||.|||.|||| ||.||
RBAM_022540__    298 AACATAACATTATCAGCGTTTCAGGTCAGCTGGATCAAAAAAGCGAATCG    347

BSNT_02911___    350 AGATATTGGAAAAAGAAGCGAG-TGCTAACCGGCTGGCCATTCATATTAA    398
                      |||||||||||||||||| || |.|.||.||||||.||||||||||.||
RBAM_022540__    348 -GATATTGGAAAAAGAAGC-AGATTCGAAACGGCTGTCCATTCATATCAA    395

BSNT_02911___    399 CGTGGATACCGGCATGGGACGATTAGGTGTACGCACAAAGGAAGAACTTT    448
                     .||||||||.||.|||||.||..|.|||||.||.||..|.|||||.||||
RBAM_022540__    396 TGTGGATACGGGAATGGGCCGGCTGGGTGTGCGTACGGAAGAAGATCTTT    445

BSNT_02911___    449 TAGAAGTAGTGAAAGCCTTAAAGGCAAGTAAATTCCTCAGATGGACAGGG    498
                     |||.|||.||||||||..|.|||.|.||||.||..||...||||...||.
RBAM_022540__    446 TAGCAGTGGTGAAAGCGCTCAAGTCGAGTACATATCTGTCATGGGATGGC    495

BSNT_02911___    499 ATTTTCACACATTTTTCGACAGCTGATGAACCGGACACAACACTCACAAA    548
                     ||.||.|||||||||||.|||||.||||||||||||||....||.||.|.
RBAM_022540__    496 ATCTTTACACATTTTTCAACAGCGGATGAACCGGACACTGAGCTGACGAT    545

BSNT_02911___    549 GCTGCAGCACGAAAAATTCATCAGTTTTCTCAGCTTTTTAAAAAAACAGG    598
                     |||||||||.|||||.||.|||||.||||||.|||||||||||||.||.|
RBAM_022540__    546 GCTGCAGCATGAAAAGTTTATCAGCTTTCTCCGCTTTTTAAAAAATCAAG    595

BSNT_02911___    599 GGATTGAGCTGCCCACCGTGCATATGTGCAACACGGCTGCAGCTATCGCT    648
                     ..|||..||||||.|||||||||||||||||.||.||.||.||||||||.
RBAM_022540__    596 ACATTACGCTGCCTACCGTGCATATGTGCAATACAGCCGCCGCTATCGCA    645

BSNT_02911___    649 TTTCCGGAATTTAGCGCTGATATGATCCGTTTAGGTATCGGCTTATATGG    698
                     ||.||||||||.|||||.||.||||||||||||||.||.||.||||||||
RBAM_022540__    646 TTCCCGGAATTCAGCGCCGACATGATCCGTTTAGGCATTGGGTTATATGG    695

BSNT_02911___    699 TTTATATCCTTCAGCCTATATTAAACAACTAAATCTCGTTAAGCTTGAAC    748
                     |||||||||.||.||||..||.||..||||.||.|||||..|.||...||
RBAM_022540__    696 TTTATATCCGTCCGCCTCGATAAAGGAACTGAACCTCGTGGATCTCACAC    745

BSNT_02911___    749 CTGCGTTAAGTTTAAAGGCGCGCATCGCTTATGTGAAAACCATGCGGACA    798
                     |.||..||||||||||||||||.|||||||||||||||.|||||..||||
RBAM_022540__    746 CCGCACTAAGTTTAAAGGCGCGTATCGCTTATGTGAAAGCCATGGTGACA    795

BSNT_02911___    799 GAACCCCGAACCGTTAGCTATGGTGCTACATACGTCGCAGAGCCTAATGA    848
                     ||.|||||.|||||.||.|||||.||.|||||..||||.||.||...|||
RBAM_022540__    796 GATCCCCGGACCGTCAGTTATGGCGCCACATATATCGCCGAACCGGGTGA    845

BSNT_02911___    849 AGTAATTGCTACACTCCCGATTGGCTATGCTGACGGCTATTCTCGTGCCC    898
                     |.|.||.||.||..|.||.||.|||||||.||||||.||.||.||.||||
RBAM_022540__    846 AATCATCGCGACGATTCCAATCGGCTATGGTGACGGTTACTCCCGCGCCC    895

BSNT_02911___    899 TTTCCAATCGCGGGTTTGTTCTTCATCGCGGAAAACGAGTGCCAGTGGCA    948
                     |.|||||.|||||||||.|||||||.|||||.|.|||.|||||.|||||.
RBAM_022540__    896 TGTCCAACCGCGGGTTTATTCTTCACCGCGGCAGACGGGTGCCGGTGGCG    945

BSNT_02911___    949 GGAAGAGTAACAATGGATATGATCATGGTCAGTTTAGGAGAAAACGGTGA    998
                     ||.|||||.|||||||||||||||||||||||||||||.||.||   |||
RBAM_022540__    946 GGGAGAGTGACAATGGATATGATCATGGTCAGTTTAGGTGAGAA---TGA    992

BSNT_02911___    999 AGGTAAACAAGGAGATGAAGTCGTGATTTACGGTAAGCAAAAAGGAGCCG   1048
                     |||.|||||||||||.||||||||.||.||||||||.|||.|||||||||
RBAM_022540__    993 AGGCAAACAAGGAGAAGAAGTCGTCATCTACGGTAAACAACAAGGAGCCG   1042

BSNT_02911___   1049 AGATTTCCGTTGATGAAGTGGCTGAAATGCTCAATACGATTAACTATGAA   1098
                     |||||||||||||||||.|.||.|||||||||..||||||.|.|||.|||
RBAM_022540__   1043 AGATTTCCGTTGATGAAATTGCCGAAATGCTCGGTACGATCAGCTACGAA   1092

BSNT_02911___   1099 GTCGTGTCTACATTAAGCCGCCGCATCCCTCGTTTTTATATAAGAGATGG   1148
                     |||.|.|||...||||||||||||.||||.||.||||||.|.|||||.||
RBAM_022540__   1093 GTCTTATCTGTGTTAAGCCGCCGCGTCCCCCGCTTTTATTTCAGAGACGG   1142

BSNT_02911___   1149 CGAGATTTTTAAAGTATCAACTCCAGTATTATACGTATAG   1188
                     |.|.||..|||||.|||||.||||.|||||||||||.|||
RBAM_022540__   1143 CAAAATCATTAAAATATCAGCTCCGGTATTATACGTGTAG   1182


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