Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02911 and RBAM_022540
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:47
# Commandline: needle
# -asequence dna-align/BSNT_02911___yncD.1.9828.seq
# -bsequence dna-align/RBAM_022540___yncD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02911___yncD-RBAM_022540___yncD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02911___yncD-RBAM_022540___yncD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02911___yncD
# 2: RBAM_022540___yncD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1190
# Identity: 944/1190 (79.3%)
# Similarity: 944/1190 (79.3%)
# Gaps: 10/1190 ( 0.8%)
# Score: 3725.0
#
#
#=======================================
BSNT_02911___ 1 TTGATGATAAAGCTTTGCCGAGAAGTTTGGATCGAAGTCAATCTTGATGC 50
||||.|||.||||||||.|||||||||||.|||||..|.||||||||
RBAM_022540__ 1 ---ATGAAAAAACTTTGCCGGGAAGTTTGGATTGAAGTTGACCTTGATGC 47
BSNT_02911___ 51 CGTTAAAAAGAATTTGCGAGCGATCCGCCGTCATATTCCACATAAGAGCA 100
..|.||||||||..|.||.|||||||||||.||||||||..|||.|...|
RBAM_022540__ 48 GATAAAAAAGAACGTACGGGCGATCCGCCGCCATATTCCGAATACGTCTA 97
BSNT_02911___ 101 AAATTATGGCTGTCGTAAAAGCGAACGGTTATGGTCACGGGTCTATAGAA 150
||||||||||.||||||||||||||||.||||||.|||||.|||.|.|||
RBAM_022540__ 98 AAATTATGGCCGTCGTAAAAGCGAACGCTTATGGCCACGGCTCTGTGGAA 147
BSNT_02911___ 151 GTGGCACGCCATGCACTGGAACACGGGGCGAGTGAGCTTGCTGTTGCCAG 200
||.||.||.||.|||||||||..|||||||||.|||||.|||||.|||||
RBAM_022540__ 148 GTAGCGCGGCAGGCACTGGAAAGCGGGGCGAGCGAGCTCGCTGTCGCCAG 197
BSNT_02911___ 201 TGTGGAGGAAGGAATCGTTTTACGTAAAGCTGGGATTACAGCACCTATCC 250
.||.||.||.|||||.||.|||||.|.|||.||.|||||.||||||||.|
RBAM_022540__ 198 CGTCGAAGAGGGAATTGTGTTACGGAGAGCGGGAATTACGGCACCTATTC 247
BSNT_02911___ 251 TTGTGCTTGGTTTTACATCCCTTAGTTGTGTAAAGAAGTCAGCAGCTTGG 300
|||||||.||.||.|||.|.||.||.|||||.||.||.||.||.|.||||
RBAM_022540__ 248 TTGTGCTCGGCTTCACAGCTCTCAGCTGTGTGAAAAAATCTGCCGTTTGG 297
BSNT_02911___ 301 AATATAACATTATCAGCATTCCAGGTTGATTGGATGAAAGAAGC-AAACG 349
||.||||||||||||||.||.|||||....|||||.|||.|||| ||.||
RBAM_022540__ 298 AACATAACATTATCAGCGTTTCAGGTCAGCTGGATCAAAAAAGCGAATCG 347
BSNT_02911___ 350 AGATATTGGAAAAAGAAGCGAG-TGCTAACCGGCTGGCCATTCATATTAA 398
|||||||||||||||||| || |.|.||.||||||.||||||||||.||
RBAM_022540__ 348 -GATATTGGAAAAAGAAGC-AGATTCGAAACGGCTGTCCATTCATATCAA 395
BSNT_02911___ 399 CGTGGATACCGGCATGGGACGATTAGGTGTACGCACAAAGGAAGAACTTT 448
.||||||||.||.|||||.||..|.|||||.||.||..|.|||||.||||
RBAM_022540__ 396 TGTGGATACGGGAATGGGCCGGCTGGGTGTGCGTACGGAAGAAGATCTTT 445
BSNT_02911___ 449 TAGAAGTAGTGAAAGCCTTAAAGGCAAGTAAATTCCTCAGATGGACAGGG 498
|||.|||.||||||||..|.|||.|.||||.||..||...||||...||.
RBAM_022540__ 446 TAGCAGTGGTGAAAGCGCTCAAGTCGAGTACATATCTGTCATGGGATGGC 495
BSNT_02911___ 499 ATTTTCACACATTTTTCGACAGCTGATGAACCGGACACAACACTCACAAA 548
||.||.|||||||||||.|||||.||||||||||||||....||.||.|.
RBAM_022540__ 496 ATCTTTACACATTTTTCAACAGCGGATGAACCGGACACTGAGCTGACGAT 545
BSNT_02911___ 549 GCTGCAGCACGAAAAATTCATCAGTTTTCTCAGCTTTTTAAAAAAACAGG 598
|||||||||.|||||.||.|||||.||||||.|||||||||||||.||.|
RBAM_022540__ 546 GCTGCAGCATGAAAAGTTTATCAGCTTTCTCCGCTTTTTAAAAAATCAAG 595
BSNT_02911___ 599 GGATTGAGCTGCCCACCGTGCATATGTGCAACACGGCTGCAGCTATCGCT 648
..|||..||||||.|||||||||||||||||.||.||.||.||||||||.
RBAM_022540__ 596 ACATTACGCTGCCTACCGTGCATATGTGCAATACAGCCGCCGCTATCGCA 645
BSNT_02911___ 649 TTTCCGGAATTTAGCGCTGATATGATCCGTTTAGGTATCGGCTTATATGG 698
||.||||||||.|||||.||.||||||||||||||.||.||.||||||||
RBAM_022540__ 646 TTCCCGGAATTCAGCGCCGACATGATCCGTTTAGGCATTGGGTTATATGG 695
BSNT_02911___ 699 TTTATATCCTTCAGCCTATATTAAACAACTAAATCTCGTTAAGCTTGAAC 748
|||||||||.||.||||..||.||..||||.||.|||||..|.||...||
RBAM_022540__ 696 TTTATATCCGTCCGCCTCGATAAAGGAACTGAACCTCGTGGATCTCACAC 745
BSNT_02911___ 749 CTGCGTTAAGTTTAAAGGCGCGCATCGCTTATGTGAAAACCATGCGGACA 798
|.||..||||||||||||||||.|||||||||||||||.|||||..||||
RBAM_022540__ 746 CCGCACTAAGTTTAAAGGCGCGTATCGCTTATGTGAAAGCCATGGTGACA 795
BSNT_02911___ 799 GAACCCCGAACCGTTAGCTATGGTGCTACATACGTCGCAGAGCCTAATGA 848
||.|||||.|||||.||.|||||.||.|||||..||||.||.||...|||
RBAM_022540__ 796 GATCCCCGGACCGTCAGTTATGGCGCCACATATATCGCCGAACCGGGTGA 845
BSNT_02911___ 849 AGTAATTGCTACACTCCCGATTGGCTATGCTGACGGCTATTCTCGTGCCC 898
|.|.||.||.||..|.||.||.|||||||.||||||.||.||.||.||||
RBAM_022540__ 846 AATCATCGCGACGATTCCAATCGGCTATGGTGACGGTTACTCCCGCGCCC 895
BSNT_02911___ 899 TTTCCAATCGCGGGTTTGTTCTTCATCGCGGAAAACGAGTGCCAGTGGCA 948
|.|||||.|||||||||.|||||||.|||||.|.|||.|||||.|||||.
RBAM_022540__ 896 TGTCCAACCGCGGGTTTATTCTTCACCGCGGCAGACGGGTGCCGGTGGCG 945
BSNT_02911___ 949 GGAAGAGTAACAATGGATATGATCATGGTCAGTTTAGGAGAAAACGGTGA 998
||.|||||.|||||||||||||||||||||||||||||.||.|| |||
RBAM_022540__ 946 GGGAGAGTGACAATGGATATGATCATGGTCAGTTTAGGTGAGAA---TGA 992
BSNT_02911___ 999 AGGTAAACAAGGAGATGAAGTCGTGATTTACGGTAAGCAAAAAGGAGCCG 1048
|||.|||||||||||.||||||||.||.||||||||.|||.|||||||||
RBAM_022540__ 993 AGGCAAACAAGGAGAAGAAGTCGTCATCTACGGTAAACAACAAGGAGCCG 1042
BSNT_02911___ 1049 AGATTTCCGTTGATGAAGTGGCTGAAATGCTCAATACGATTAACTATGAA 1098
|||||||||||||||||.|.||.|||||||||..||||||.|.|||.|||
RBAM_022540__ 1043 AGATTTCCGTTGATGAAATTGCCGAAATGCTCGGTACGATCAGCTACGAA 1092
BSNT_02911___ 1099 GTCGTGTCTACATTAAGCCGCCGCATCCCTCGTTTTTATATAAGAGATGG 1148
|||.|.|||...||||||||||||.||||.||.||||||.|.|||||.||
RBAM_022540__ 1093 GTCTTATCTGTGTTAAGCCGCCGCGTCCCCCGCTTTTATTTCAGAGACGG 1142
BSNT_02911___ 1149 CGAGATTTTTAAAGTATCAACTCCAGTATTATACGTATAG 1188
|.|.||..|||||.|||||.||||.|||||||||||.|||
RBAM_022540__ 1143 CAAAATCATTAAAATATCAGCTCCGGTATTATACGTGTAG 1182
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