Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03604 and RBAM_022510
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:52
# Commandline: needle
# -asequence dna-align/BSNT_03604.1.9828.seq
# -bsequence dna-align/RBAM_022510.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03604-RBAM_022510.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03604-RBAM_022510.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03604
# 2: RBAM_022510
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 361
# Identity: 111/361 (30.7%)
# Similarity: 111/361 (30.7%)
# Gaps: 218/361 (60.4%)
# Score: 326.0
#
#
#=======================================
BSNT_03604 0 -------------------------------------------------- 0
RBAM_022510 1 ATGATACATCAACCTAACAAAAAGGAGGGTGTCTTCTATGGACAGCAACA 50
BSNT_03604 0 -------------------------------------------------- 0
RBAM_022510 51 CAGTTGTGGCAGTGTGCGCTCTGTTAAGTGTTGTGATTCAGATCGGAACG 100
BSNT_03604 0 -------------------------------------------------- 0
RBAM_022510 101 ATATTCGCCGCAGGAAAGTGGAAAAAAGAATAAATAAAAACAAATTGACG 150
BSNT_03604 1 ----------------------------------TT-----------GAA 5
|| |||
RBAM_022510 151 GTTTTTTCGCACAAGCGTATGCTTATAAATAACCTTGTAAAAGATAAGAA 200
BSNT_03604 6 AGAAGTTAAAGCCATGAAAAAATTCGTTCTGCTGCTGGCGGCAGCTGTCA 55
|||||.||.....|||||||||.||.||||.||..|.||.||.|||||||
RBAM_022510 201 AGAAGATATGTATATGAAAAAAATCATTCTCCTCTTCGCCGCCGCTGTCA 250
BSNT_03604 56 TCACAT---GCTCCATCGGCCACCAAA--TCAGCGGCGGCTACAAAGGCC 100
| || ||||.||||||||.|||| ||| ||.||.||.||||..|
RBAM_022510 251 T---ATTCAGCTCGATCGGCCATCAAATTTCA--GGAGGATATAAAGATC 295
BSNT_03604 101 CCGAAAAAGAGCGGCGAAAACATCACTCTGCACTC----AAGAT-ATTCA 145
|.|||||.||.|||.|||||| |..|.||.|| || || .||||
RBAM_022510 296 CTGAAAAGGAACGGAGAAAAC----CGTTTCATTCGTTTAA-ATGGTTCA 340
BSNT_03604 146 GTCGGTAA--- 153
|.||||.|
RBAM_022510 341 GCCGGTCATAA 351
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