Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_03602 and RBAM_022480

See Amino acid alignment / Visit BSNT_03602 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:52
# Commandline: needle
#    -asequence dna-align/BSNT_03602___yqiH.1.9828.seq
#    -bsequence dna-align/RBAM_022480___yqiH.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03602___yqiH-RBAM_022480___yqiH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03602___yqiH-RBAM_022480___yqiH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03602___yqiH
# 2: RBAM_022480___yqiH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 344
# Identity:     180/344 (52.3%)
# Similarity:   180/344 (52.3%)
# Gaps:          97/344 (28.2%)
# Score: 357.5
# 
#
#=======================================

BSNT_03602___      1 GTGA-----AACAAACGGTTCTTTTGCTGTTTACTGC---GCTCTTTCTT     42
                     ||||     |.||     |.|||.||.|.||.||.||   |||.|   |.
RBAM_022480__      1 GTGAAGTCTATCA-----TACTTCTGATCTTCACCGCATGGCTGT---TA     42

BSNT_03602___     43 TCGGGGTGC-AGTGTTGCAAGTGCGGA---TGACTCAGTGCCAAGGTTTA     88
                     ||.||.||| |||.|    |..|||||   |||..|.|.|||....||||
RBAM_022480__     43 TCAGGCTGCGAGTAT----ACCGCGGAGGCTGATGCGGCGCCGTCATTTA     88

BSNT_03602___     89 CCGAAGAGGGAAAATACATT---------GGCTCGGCTGATCCTCATACG    129
                     |..|.||.|||    |||||         |||    |.||..| .|||||
RBAM_022480__     89 CTCAGGAAGGA----ACATTTATAAAAGCGGC----CGGAAAC-GATACG    129

BSNT_03602___    130 ATTGCGGTTTCTCTTAATGGA-GAAGAAA-CCATGATACAAGTTCCGAAG    177
                     ||.||||    ||..|||.|| |.||||| .||.|     ||.|  ||||
RBAM_022480__    130 ATCGCGG----TCGAAATTGACGGAGAAAGGCAAG-----AGGT--GAAG    168

BSNT_03602___    178 ---------GATAAACGTGATGAATGTGAATCACTGCCAGATCAGACACA    218
                              |.|||.||...|||||||.|.||.|||||.||    |||.|
RBAM_022480__    169 GTGCCTTTCGCTAAGCGGTTTGAATGTCAGTCTCTGCCTGA----ACATA    214

BSNT_03602___    219 TGTCCTGGTGAAA------TATACAAAGAAGGATAATGGAACTTTACAGC    262
                     .|.|  ||||.||      ||||.|||..||...||.|||...||||.||
RBAM_022480__    215 CGGC--GGTGCAAATCACCTATAAAAAAGAGAGCAACGGACAATTACGGC    262

BSNT_03602___    263 T---GGAA--GATATTCAGCTGCGAAAGAACTCGTCATAA----    297
                     |   ||||  ||.|          ||||||...|  |||.    
RBAM_022480__    263 TTGAGGAACTGAAA----------AAAGAAACAG--ATATGTGA    294


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.