Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03600 and RBAM_022460

See Amino acid alignment / Visit BSNT_03600 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:52
# Commandline: needle
#    -asequence dna-align/BSNT_03600___yqiK.1.9828.seq
#    -bsequence dna-align/RBAM_022460___yqiK.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03600___yqiK-RBAM_022460___yqiK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03600___yqiK-RBAM_022460___yqiK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03600___yqiK
# 2: RBAM_022460___yqiK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 773
# Identity:     511/773 (66.1%)
# Similarity:   511/773 (66.1%)
# Gaps:          76/773 ( 9.8%)
# Score: 1518.5
# 
#
#=======================================

BSNT_03600___      1 ATGACAAAGATTTTTGCCCACCGGGGGGCATCAGGTCAATTTCCC-GAAA     49
                     |||||.||.||||||||||||||||||||.|| ||.|.|.|.||| ||||
RBAM_022460__      1 ATGACGAATATTTTTGCCCACCGGGGGGCGTC-GGGCGACTGCCCTGAAA     49

BSNT_03600___     50 ATACAATGCTTGCATTTGAAAAAGGAATTGAAGCCGGAGCGGATGGGATA     99
                     ||||.||||..||.||..||||||..|||||.|.|||.||.||.||.||.
RBAM_022460__     50 ATACGATGCCCGCGTTCAAAAAAGCGATTGAGGACGGGGCTGACGGAATC     99

BSNT_03600___    100 GAGCTTGATGTACAGCTGACGAAAGACGGACGCATTGTTGTGATTCATGA    149
                     ||.||||||||||||.||||.||||||||.||.||.||.||.|||||.||
RBAM_022460__    100 GAACTTGATGTACAGATGACAAAAGACGGCCGGATCGTGGTCATTCACGA    149

BSNT_03600___    150 TGAAAGACTTAATCGCACGACATCACTTAAAGGATTCGTGAAGGATACAA    199
                     |||||.|||..|.||||||||.||..|.||||||||.|||||.|||||..
RBAM_022460__    150 TGAAACACTCGACCGCACGACGTCTTTGAAAGGATTTGTGAAAGATACGG    199

BSNT_03600___    200 CCTATGATGAGGTAAAGACTGCGAATGCGGCCG----CTGGTCACGATCA    245
                     |.|||||..|..|.|..||.||..||||.||||    .||| .|.|||  
RBAM_022460__    200 CGTATGACAAAATCAGAACCGCCGATGCCGCCGGAAAATGG-AAAGAT--    246

BSNT_03600___    246 AGCGTACAGCGATATAAAAGTGCCGCTGCTAGAAGATGTGCTCTCG-TGG    294
                      ||.|..|..|.|.|.|.|.|.|||||..|...||||||||| .|| |..
RBAM_022460__    247 -GCTTTTAAGGGTGTCAGAATTCCGCTTTTGTCAGATGTGCT-GCGTTTT    294

BSNT_03600___    295 GCGGTAAAAAAG----GATTTTCTCATCAACATTGAATTAAAAAACAGCG    340
                     ||||    ||.|    ||||||||.||.||||||||..|.||||||||.|
RBAM_022460__    295 GCGG----AACGTGCTGATTTTCTGATAAACATTGAGCTGAAAAACAGTG    340

BSNT_03600___    341 TGATCCGCTATGAGGGAATGGAAGAAAAAGTGCTGGAGGCAGTGAAGCGA    390
                     |..||||.||.||.||||||||||||.|||||.|..|...|||.|   ||
RBAM_022460__    341 TATTCCGTTACGAAGGAATGGAAGAAGAAGTGATTAAAAAAGTCA---GA    387

BSNT_03600___    391 TTCAATGTA--GA--GGACA---GAGTCATCCTATCCACCTTTAATCATG    433
                     |   || ||  ||  |||.|   |.||.||..|.||..|.||||||||||
RBAM_022460__    388 T---AT-TACGGACTGGAAAAGCGCGTTATTTTTTCTTCATTTAATCATG    433

BSNT_03600___    434 ACAG-CTTGGCGCTATG---CGCCCGGCTTGCGCCGCATATCGAACGGGC    479
                     |.|| ||| ||..|.||   ||||   ||.|||||..|.||.||||||||
RBAM_022460__    434 AGAGTCTT-GCAGTTTGCCACGCC---CTGGCGCCTGAAATTGAACGGGC    479

BSNT_03600___    480 AGTATTAACTTCAGATGTGCTTTATCAGGCAGATCGATATATCGCGTCTA    529
                     .||..|.||....||||||||.||.|.|.|.||.||.|||.|.||..|.|
RBAM_022460__    480 GGTGCTGACAATGGATGTGCTGTACCGGCCTGAACGGTATCTTGCCGCCA    529

BSNT_03600___    530 TTCCGGCTTCCGGCTATCACCCGAAGCTAAACAGCCCAGGGGTCACAGAT    579
                     ||||.|||||.||.|||||.||||||||....|..||.|.|||.|..|.|
RBAM_022460__    530 TTCCCGCTTCGGGTTATCATCCGAAGCTCGGTACGCCGGCGGTGAGCGCT    579

BSNT_03600___    580 GAAGTACTGAA-------GAAAATGAGGAA-CGGTTTGATTAAGGTAAGG    621
                     |||||..|.||       |.|||..|..|| |||        .|.|..|.
RBAM_022460__    580 GAAGTGATCAAACATCTTGCAAAACACCAAGCGG--------CGCTCCGT    621

BSNT_03600___    622 CCGTATACAGTCAATCGTCCGGAAGATATGAAGCGTCTCATTGAAGCGGG    671
                     ||||..||.|||||||||||.||.||||||||||...|.||..|||||||
RBAM_022460__    622 CCGTTCACCGTCAATCGTCCTGAGGATATGAAGCAGATGATGAAAGCGGG    671

BSNT_03600___    672 AGCAGACGGCATGTTTACCGACTTTCCAGAAAAGGCTTCGGC-ATTGC--    718
                     ||||||||..||.||||||||.|.|||    ||.|||  ||| .||.|  
RBAM_022460__    672 AGCAGACGCAATTTTTACCGATTATCC----AAAGCT--GGCTGTTTCTA    715

BSNT_03600___    719 TGAAAAATGAAT-----AG----    732
                     |.|||.|.||||     ||    
RBAM_022460__    716 TAAAAGAAGAATGCCGCAGCTGA    738


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03600 and RBAM_022460

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
