Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03594 and RBAM_022420
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:52
# Commandline: needle
# -asequence dna-align/BSNT_03594___mmgD.1.9828.seq
# -bsequence dna-align/RBAM_022420___mmgD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03594___mmgD-RBAM_022420___mmgD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03594___mmgD-RBAM_022420___mmgD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03594___mmgD
# 2: RBAM_022420___mmgD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1164
# Identity: 773/1164 (66.4%)
# Similarity: 773/1164 (66.4%)
# Gaps: 111/1164 ( 9.5%)
# Score: 2354.0
#
#
#=======================================
BSNT_03594___ 1 ATGGAGGAGAAACAGCATTATTCTCCAGGGTTGGACGGTGTGATTGCGGC 50
||||| |.| |||||||||.||.||.||.||..|.|||||||.
RBAM_022420__ 1 ATGGA--------ATC-TTATTCTCCCGGTTTAGATGGCATCATTGCGGT 41
BSNT_03594___ 51 AGAAACTCATATTTCTTATCTTGACACCCAGTCCA-GCCAG-ATTTTGAT 98
.|||||....|||||||..||.||.||.||| || |.||| |||||.||
RBAM_022420__ 42 GGAAACGGGGATTTCTTTCCTGGATACACAG--CAGGGCAGTATTTTAAT 89
BSNT_03594___ 99 ACGGGGCTATGATTTAATAGAACTTTCTGAAACAAAAAGCTATCTGGAGC 148
....|||.|.|||.|.||.||.||||||.||||.....|||||.||||..
RBAM_022420__ 90 CAAAGGCCACGATCTGATTGAGCTTTCTAAAACGGCCGGCTATATGGACA 139
BSNT_03594___ 149 TTGTCCATTTATTGCTGGAGGGCAGGCTGCCAGA--AGAAAGTGAAATGG 196
||||.|||.|.||..||||.|.|||.||.||.|| .|||||.||| ||
RBAM_022420__ 140 TTGTTCATCTCTTATTGGAAGACAGACTTCCTGATGTGAAAGAGAA--GG 187
BSNT_03594___ 197 AAACGCTGGA-----ACGTAAAATAAACAGTGC--CTCAAGCCTGCCTGC 239
.|.||||.|| |||| .|.|.|| |..|..|||.||.|.
RBAM_022420__ 188 CAGCGCTTGAAGAAGACGT-------TCGGCGCGGCGGACACCTTCCCGA 230
BSNT_03594___ 240 TGATCATCT----------CCGTCTGCTTGAGCTGCTCCCTAAGGACACT 279
.|| .|||| ||||||||| .|||.|| .|.|||
RBAM_022420__ 231 GGA-AATCTTGCACATATGCCGTCTGCT--------GCCCGAA-CATACT 270
BSNT_03594___ 280 CATCCAATGGATAGTCTGCGTACCGGCCTGTCGGCACTTGCTGGCTATGA 329
||.||.|||||..|..||.|.||.||..||||.||.||||..||||.|||
RBAM_022420__ 271 CACCCGATGGACGGATTGAGGACGGGTTTGTCTGCGCTTGGAGGCTTTGA 320
BSNT_03594___ 330 TCGGCAA----ATTGATGATCGGTCTCCTTCCGCAAA-CAAAGAACGCGC 374
||| ||.|||||.||.||..||||||.||| | ||.|| |||
RBAM_022420__ 321 ----CAAGGACATCGATGACCGTTCATCTTCCGTAAATC--AGCAC-CGC 363
BSNT_03594___ 375 CTATCAG--CTTCTTGGGAAAATGCCTGCCCTCACTGCTGCCAGCTACAG 422
.||...| ||..|.||.||||||||....||.||.|....||||||..|
RBAM_022420__ 364 GTACGCGGACTGATAGGCAAAATGCCGAATCTGACGGTCAACAGCTATCG 413
BSNT_03594___ 423 GATCATTAATAAGAAAGAACCGATTCTTCCGCTTCAAACCCTATCCTACA 472
..||||.||...|...||.||..|...||||.|...||||.||||.||||
RBAM_022420__ 414 AGTCATCAACGGGCTGGAGCCTTTGGCTCCGGTCGGAACCTTATCATACA 463
BSNT_03594___ 473 GTGCGAATTTTCTCTACATGATGACAGGGAAATTGCCGTCTTCATTGGAA 522
|.||.||.|||.|.||.|||||.||.||.|||..||||||.||.||||||
RBAM_022420__ 464 GCGCAAACTTTTTATATATGATTACCGGAAAAACGCCGTCATCTTTGGAA 513
BSNT_03594___ 523 GAACAGATTTTTGACCGGTCGCTCGTCCTGTACAGTGAGCATGAGATGCC 572
|||.|.||.||.|||.|||||||..|..|.||||||||||||||..||||
RBAM_022420__ 514 GAAGAAATCTTCGACAGGTCGCTTCTTTTATACAGTGAGCATGAATTGCC 563
BSNT_03594___ 573 GAATTCAACCTTTGCGGCCAGGGTCATTGCATCTACACATTCAGATCTTT 622
|||.|||||.|||.|||||.|.|||||.||.||.||.||.||.|||.|||
RBAM_022420__ 564 GAACTCAACGTTTACGGCCCGTGTCATCGCTTCGACGCAATCGGATATTT 613
BSNT_03594___ 623 ATGGGGCTTTGACTGGGGCTGTCGCTTCCCTGAAAGGGAATCTTCACGGA 672
|.||.||..||||.||.||.|||||.||.||.||.||.|||||||||||.
RBAM_022420__ 614 ACGGCGCGCTGACCGGAGCCGTCGCCTCGCTTAAGGGAAATCTTCACGGC 663
BSNT_03594___ 673 GGAGCAAACGAAGCTGTGATGTATTTGCTTTTGGAGGCAAA----AACGA 718
|||||.||||||||.||.|||||..|||||..|||.||.|| |..||
RBAM_022420__ 664 GGAGCGAACGAAGCGGTTATGTACATGCTTGAGGAAGCGAAGGATACAGA 713
BSNT_03594___ 719 CATCTGATTTTGAGCAGCTTTTGCAAAC---AAAACT-GAAAAGAAAAGA 764
| |..|||...||..|.|| ||| |||||| |.||| .|||||
RBAM_022420__ 714 C----GGGTTTACACAATTATT---AACTCAAAAACTCGCAAA-CAAAGA 755
BSNT_03594___ 765 AAAAATCATGGGCTTCGGCCACCGGGTGTATATGAAAAAAATGGACCCGA 814
||||||||||||||||||||||||.||.||.|||||||||||||||||||
RBAM_022420__ 756 AAAAATCATGGGCTTCGGCCACCGTGTCTACATGAAAAAAATGGACCCGA 805
BSNT_03594___ 815 GAGCACTCATGATGAAAGAGGCGCTGCAGCAATTATGCGATAAAGCCGGT 864
|.||.||||||||||||||.|||.||.|.||..|.|..|||....|.|||
RBAM_022420__ 806 GGGCGCTCATGATGAAAGAAGCGTTGAAACAGCTGTCTGATCTTTCAGGT 855
BSNT_03594___ 865 GA---CCATCGTTTAT-ATGAGATGTGCGAAGCGGGTG--AGCGGC-TGA 907
|| ||.|| ||||| || |||||.|||||.||.| |.||.| ||.
RBAM_022420__ 856 GATTTCCGTC-TTTATCAT---ATGTGTGAAGCCGGCGAAACCGTCATGC 901
BSNT_03594___ 908 TGGAGAAGGAAAAAGGGCTTTACCCGAATTTGGATTACTATGCTGCCCCA 957
.||||| |||||||.|||||.||||||||.||||||||.||.||.||.
RBAM_022420__ 902 GGGAGA---AAAAAGGCCTTTATCCGAATTTAGATTACTACGCAGCGCCG 948
BSNT_03594___ 958 GTGTATTGGATGCTCGGCATACCGATTCCTTTATATACGCCGATCTTTTT 1007
||.||||..|||||||||||.|||||.||..|.||.|||||.||.||.||
RBAM_022420__ 949 GTCTATTACATGCTCGGCATCCCGATACCGCTGTACACGCCTATATTCTT 998
BSNT_03594___ 1008 CAGCGCGAGAACGTCCGGTTTATGCGCCCATGTGATCGAACAGCATA-CC 1056
||||||..|.|||..|||..|.|||||.||.||.||.||||||||.| ||
RBAM_022420__ 999 CAGCGCACGGACGGTCGGACTGTGCGCTCACGTCATTGAACAGCACAGCC 1048
BSNT_03594___ 1057 AATAATCGGCTCTTCCGTCCCCGTGTCAGTTACATGGGCCCGCG-ATATC 1105
.| ||.|||||.|||||.||.||||||.|.||.|..||..|||| .|.|.
RBAM_022420__ 1049 GA-AACCGGCTTTTCCGCCCGCGTGTCCGCTATACCGGAGCGCGCCTGTA 1097
BSNT_03594___ 1106 AAACAAAACCATGA 1119
|
RBAM_022420__ 1098 A------------- 1098
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