Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03582 and RBAM_022340
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:50
# Commandline: needle
# -asequence dna-align/BSNT_03582___lpdV.1.9828.seq
# -bsequence dna-align/RBAM_022340___lpdV.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03582___lpdV-RBAM_022340___lpdV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03582___lpdV-RBAM_022340___lpdV.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03582___lpdV
# 2: RBAM_022340___lpdV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1457
# Identity: 1087/1457 (74.6%)
# Similarity: 1087/1457 (74.6%)
# Gaps: 67/1457 ( 4.6%)
# Score: 3999.5
#
#
#=======================================
BSNT_03582___ 1 ATGGCAACTGAGTATGACGTAGTCATTCTGGGCGGCGGTACCGGCGGTTA 50
|||||.|||||||||||.||.|||||||||||||||||.||.||||||||
RBAM_022340__ 1 ATGGCGACTGAGTATGATGTGGTCATTCTGGGCGGCGGCACGGGCGGTTA 50
BSNT_03582___ 51 TGTTGCGGCCATCAGAGCCGCTCAGCTCGGCTTAAAAACAGCCGTTGTGG 100
|||.||.|||||||||||.||.|||||||||||||||||.||||||||.|
RBAM_022340__ 51 TGTAGCCGCCATCAGAGCGGCCCAGCTCGGCTTAAAAACGGCCGTTGTAG 100
BSNT_03582___ 101 AAAAGGAAAAACTCGGAGGAACATGTCTGCATAAAGGCTGTATCCCGAGT 150
||||.|||||.||.||.||||||||.|||||||||||.||||||||||||
RBAM_022340__ 101 AAAAAGAAAAGCTTGGCGGAACATGCCTGCATAAAGGATGTATCCCGAGT 150
BSNT_03582___ 151 AAAGCGCTGCTTAGAAGCGCAGAGGTATACCGGACAGCTCGTGAAGCCGA 200
|||||||||.|.||||||||.||.||.|||||.||.||....|||||.|
RBAM_022340__ 151 AAAGCGCTGTTAAGAAGCGCGGAAGTGTACCGAACCGCAAAGGAAGCGG- 199
BSNT_03582___ 201 TCA--ATTCGGGGTGGAAACGGCTGGCGTGTCCCTCAACTTTGAAAAAGT 248
|| ||||||..|.|||||||..||.||.||||||..||||||.|..||
RBAM_022340__ 200 -CAGCATTCGGCATTGAAACGGAAGGTGTCTCCCTCCGCTTTGACAGCGT 248
BSNT_03582___ 249 GCAGCAGCGTAAGCAAGCCGTTGTTGATAAGCTTGCAGCGGGTGTAAATC 298
|||..|.||.|||||.|...|.|||||...|||.||.|..|||||....|
RBAM_022340__ 249 GCAAAAACGAAAGCAGGGAATCGTTGACCGGCTGGCCGGCGGTGTCGCCC 298
BSNT_03582___ 299 ATTTAATGAAAAAAGGAAAAATTGACGTGTACACCGGATATGGACGTATC 348
|.||.||||||||.||.||.|||||.||.|.||.|||.||.||||||||.
RBAM_022340__ 299 ACTTGATGAAAAAGGGGAAGATTGATGTATTCAACGGGTACGGACGTATG 348
BSNT_03582___ 349 CTTGGACCGTCAATCTTCTCTCCGCTGCCGGGAACAATTTCTGTTGA--- 395
||.||.||.||.||||||||.||.||.||.||.||..||||.||.||
RBAM_022340__ 349 CTCGGCCCTTCCATCTTCTCACCTCTTCCCGGTACGGTTTCAGTCGAATA 398
BSNT_03582___ 396 -GCGGGGAAATGGCGAAGAAAATGACATGCTGATACCGAAACAAGTGATC 444
|| ||||||.||||||||.|||||||||||||||||||||.||||.
RBAM_022340__ 399 CGC----AAATGGTGAAGAAAACGACATGCTGATACCGAAACAATTGATT 444
BSNT_03582___ 445 ATTGCAACAGGATCAAGACCGAGAATGCTTCCGGGTCTTGAAGCGGACGG 494
||.|||||.||.|||||.||||.||||||.||||||.|.|||||.|||||
RBAM_022340__ 445 ATCGCAACCGGTTCAAGGCCGAAAATGCTGCCGGGTTTAGAAGCAGACGG 494
BSNT_03582___ 495 TAAGTCTGTACTGACTTCAGATGAGGCGCTCCAAATGGAGGAGCTGCCAC 544
||..|.|.|.|||||.||||||||.|||.|..|..|.||....|||||.|
RBAM_022340__ 495 TACATATATTCTGACATCAGATGAAGCGTTAGAGCTTGAACGTCTGCCCC 544
BSNT_03582___ 545 AATCAATCATCATTGTCGGCGGAGGGGTTATCGGTATCGAATGGGCGTCT 594
||||.||.||.||.||||||||.||.||.|||||.||.||||||||.||.
RBAM_022340__ 545 AATCCATGATGATCGTCGGCGGCGGTGTCATCGGAATTGAATGGGCATCC 594
BSNT_03582___ 595 ATGCTTCATGATTTTGGTGTGAAGGTAACGGTTATTGAATACGCGGATCG 644
|||||..|.|||||.||.||.||..|.||.||.||||||||.||.||.||
RBAM_022340__ 595 ATGCTGAACGATTTCGGCGTCAATATCACTGTGATTGAATATGCAGACCG 644
BSNT_03582___ 645 CATATTGCCGACTGAAGATCTAGAGATTTCAAAAGAAATGGAAAGTCTTC 694
|||.||||||||.|||||.|..||.|||||||..||.|||||||..| |.
RBAM_022340__ 645 CATTTTGCCGACGGAAGACCGTGATATTTCAAGCGAGATGGAAAAAC-TG 693
BSNT_03582___ 695 TTAA-GAAAAAAGGCATCCAGTTCATAACAGGGGCAAAAGTGCTGCCTGA 743
|||| |||||||||.||..||.||.|.||.||.||.||||||||.||.||
RBAM_022340__ 694 TTAACGAAAAAAGGAATTAAGATCGTGACGGGTGCGAAAGTGCTTCCGGA 743
BSNT_03582___ 744 CACAATGACAAAAAC-------------AT--CAGATGATATCAGCATAC 778
.|||.||..||||.| || |.|.|||.| ||.||
RBAM_022340__ 744 TACATTGGAAAAAGCGGACGGCGTTTCAATTGCCGCTGAAA--AGAAT-- 789
BSNT_03582___ 779 AAGCGGAAAAAGACGGAGAAACCGTTACCTACTCTGCTGAGAAAATGCTA 828
||||||| .|||||| .||.| || ||.||..|||||||.
RBAM_022340__ 790 ----GGAAAAA----AAGAAAC--GTATC-AC---GCGGAACAAATGCTT 825
BSNT_03582___ 829 GTTTCCATCGGCAGACAGGCAAATATCGAAGGCATTGGCCTAGAGAACAC 878
||||||||||||.|.|||.|.||.||.|||||.||.||.||.||.|||||
RBAM_022340__ 826 GTTTCCATCGGCCGCCAGCCGAACATTGAAGGGATCGGGCTTGAAAACAC 875
BSNT_03582___ 879 CGATATTGTTACTGAAAATGGCATGATTTCA--GTCAATGAAAGCTGCCA 926
.|||||||...|.|||||.|| |..|.||| ||.||.|||..|.|.||
RBAM_022340__ 876 GGATATTGAAGCGGAAAACGG--TTCTATCATCGTGAACGAAGCCGGGCA 923
BSNT_03582___ 927 GACGAAGGAATCTCATATTTATGCAATTGGAGACGTAATCGGTGGTCTGC 976
||||||||||||.||.||||||||.||.||.||.||..||||.||.||||
RBAM_022340__ 924 GACGAAGGAATCGCACATTTATGCGATCGGTGATGTTGTCGGCGGGCTGC 973
BSNT_03582___ 977 AGTTAGCTCACGTTGCTTCACATGAGGGAATTATTGCTGTTGAGCATTTT 1026
||.|.||.||.||.||.||.|.||||||.||.|||||.|||||||||.|.
RBAM_022340__ 974 AGCTTGCGCATGTGGCCTCCCGTGAGGGCATCATTGCCGTTGAGCATATG 1023
BSNT_03582___ 1027 GCAGGTCTCAATCCGCATCCGCTTGAT-CCGACGCTTGTGCCGAAGTGCA 1075
||.|||||.||||||..|||||||||| ||| |.|||||||||||.||.|
RBAM_022340__ 1024 GCGGGTCTTAATCCGGCTCCGCTTGATGCCG-CTCTTGTGCCGAAATGTA 1072
BSNT_03582___ 1076 TTTACTCAAGCCCTGAAGCTGCCAGTGTTGGCTTAACCGAAGACGAAGC- 1124
||||.||||..||.|||||.||.||.||.||..|.||.|||||.|||||
RBAM_022340__ 1073 TTTATTCAAATCCGGAAGCGGCGAGCGTCGGTCTGACAGAAGAGGAAGCT 1122
BSNT_03582___ 1125 ------AAAGGCGAACGGGCATAATGTCAAAATCGGCAAGTTCCCATTTA 1168
||| ||||||.|..|.||.|||||.|||||.||.||.|
RBAM_022340__ 1123 CTTCGAAAA-------GGGCATGAACTGAAGATCGGGAAGTTTCCGTTCA 1165
BSNT_03582___ 1169 TGGCGATTGGAAAAGCGCTTGTATACGGTGAAAGCGACGGTTTTGTCAAA 1218
||||.||.|||||.||.|||||||||||.||.|||||.||.|||||||||
RBAM_022340__ 1166 TGGCAATCGGAAAGGCTCTTGTATACGGAGATAGCGATGGCTTTGTCAAA 1215
BSNT_03582___ 1219 ATCGTGGCGGACCGAGATACAGATGATATTCTCGGCGTTCATATGATCGG 1268
|||||.||.||.||..|||||||||||||||||||.||.|||||||||||
RBAM_022340__ 1216 ATCGTCGCCGATCGGAATACAGATGATATTCTCGGTGTCCATATGATCGG 1265
BSNT_03582___ 1269 CCCGCATGTCACCGACATGATTTCTGAAGCGGGTCTTGCCAAAGTGCTGG 1318
.|||||.||||||||.|||||.|||||||||||.||||||||.|||||.|
RBAM_022340__ 1266 TCCGCACGTCACCGATATGATCTCTGAAGCGGGGCTTGCCAAGGTGCTCG 1315
BSNT_03582___ 1319 ACGCAACGCCGTGGGAGATCGGGCAAACGATTCACCCGCATCCAACGCTT 1368
||||.|||||.|||||.|||||.||..|.||.||.||||||||..||||.
RBAM_022340__ 1316 ACGCGACGCCTTGGGAAATCGGCCAGTCCATACATCCGCATCCGTCGCTG 1365
BSNT_03582___ 1369 TCTGAAGCAATTGGGGAAGCAGCGCTTGCCGCAGATGGCAAAGCCATTCA 1418
||.|||||.|||||.|||||.|||.|.||||||||.||.||.||.|||||
RBAM_022340__ 1366 TCAGAAGCGATTGGAGAAGCTGCGTTAGCCGCAGACGGAAACGCGATTCA 1415
BSNT_03582___ 1419 TTTTTAA 1425
|||||||
RBAM_022340__ 1416 TTTTTAA 1422
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