Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03580 and RBAM_022330
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:50
# Commandline: needle
# -asequence dna-align/BSNT_03580___bkdAA.1.9828.seq
# -bsequence dna-align/RBAM_022330___bkdAA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03580___bkdAA-RBAM_022330___bkdAA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03580___bkdAA-RBAM_022330___bkdAA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03580___bkdAA
# 2: RBAM_022330___bkdAA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1000
# Identity: 804/1000 (80.4%)
# Similarity: 804/1000 (80.4%)
# Gaps: 14/1000 ( 1.4%)
# Score: 3209.0
#
#
#=======================================
BSNT_03580___ 1 ATGAGTACAAACCGACATCAAGCACTAGGGCTGACTGATCAGGAAGCCGT 50
||||.|||||||||.|||||||||.|||||||..||||..|.||||||||
RBAM_022330__ 1 ATGACTACAAACCGCCATCAAGCATTAGGGCTCTCTGACGAAGAAGCCGT 50
BSNT_03580___ 51 TGATATGTATAGAACCATGCTGTTAGCAAGAAAAATCGATGAAAGAATGT 100
|||.|||||||||||||||||||||||.|||||||||||.||||||||||
RBAM_022330__ 51 TGAAATGTATAGAACCATGCTGTTAGCCAGAAAAATCGACGAAAGAATGT 100
BSNT_03580___ 101 GGCTGTTAAACCGTTCTGGCAAAATTCCATTTGTAATTTCTTGTCAAGGA 150
||||.||||||||.||.|||||||||||.||.||..||||.|||||||||
RBAM_022330__ 101 GGCTCTTAAACCGCTCGGGCAAAATTCCGTTCGTTGTTTCATGTCAAGGA 150
BSNT_03580___ 151 CAGGAAGCAGCACAGGTAGGAGCGGCTTTCGCACTT-GACCGTGAAATGG 199
||||||||.||.||.|||||.|||||.|..|| ||| .|||||||.|..|
RBAM_022330__ 151 CAGGAAGCGGCGCAAGTAGGCGCGGCCTATGC-CTTAAACCGTGATACCG 199
BSNT_03580___ 200 ATTATGTATTGCCGTACTACAGAGACATGGGTGTCGTGCTCGCGTTTGGC 249
|.|||||..|.||||||||||||||.||.||.||.|||||.||.||.||.
RBAM_022330__ 200 ACTATGTGCTTCCGTACTACAGAGATATAGGGGTTGTGCTTGCATTCGGT 249
BSNT_03580___ 250 ATGACAGCAAAGGACTTAATGATGTCCGGGTTTGCAAAAGCAGCAGATCC 299
|||||.||||||||.||.||||||||.||.|||||.||||||||.||.||
RBAM_022330__ 250 ATGACTGCAAAGGATTTGATGATGTCGGGTTTTGCGAAAGCAGCTGACCC 299
BSNT_03580___ 300 GAACTCAGGAGGCCGCCAGATGCCGGGACATTTCGGACAAAAGAAAAACC 349
|||||||||.||..|.|||||||||||.||.|||||.||||||||||||.
RBAM_022330__ 300 GAACTCAGGCGGAAGGCAGATGCCGGGCCACTTCGGGCAAAAGAAAAACA 349
BSNT_03580___ 350 GCATTGTGACGGGATCATCTCCGGTTACAACGCAAGTGCCGCACGCAGTC 399
|.||.||.|||||.|||||.||.|||||.|||||.|||||.||.||||||
RBAM_022330__ 350 GAATCGTAACGGGCTCATCCCCTGTTACGACGCAGGTGCCTCATGCAGTC 399
BSNT_03580___ 400 GGTATTGCGCTTGCGGGACGTATGGAGAAAAAGGATATCGCAGCCTTTGT 449
||.||.||||||||||||||.|||||.|||||||||||||...|.||.||
RBAM_022330__ 400 GGAATCGCGCTTGCGGGACGCATGGATAAAAAGGATATCGTCTCTTTCGT 449
BSNT_03580___ 450 TACATTTGGGGAAGGGTCTTCAAACCAAGGCGATTTCCACGAAGGGGCAA 499
|||.|||||.|||||.|||||.|||||.||.|||||.|||||||||||||
RBAM_022330__ 450 TACCTTTGGAGAAGGATCTTCCAACCAGGGGGATTTTCACGAAGGGGCAA 499
BSNT_03580___ 500 ACTTTGCCGCTGTCCATAAGCTGCCGGTTATTTTCATGTGTGAAAACAAC 549
||||||||||.||..||||.||||||||.||||||||||||||||||||.
RBAM_022330__ 500 ACTTTGCCGCCGTGTATAAACTGCCGGTCATTTTCATGTGTGAAAACAAT 549
BSNT_03580___ 550 AAATACGCAATCTCGGTGCCTTACGATAAGCAAGTCGCATGTGAGAACAT 599
||.||.||.||.||.||.||.||.||.|..||.||.||.||.|||||.||
RBAM_022330__ 550 AAGTATGCTATTTCTGTCCCGTATGACAGACAGGTGGCGTGCGAGAAAAT 599
BSNT_03580___ 600 TTCCGACCGTGCCGTTGGCTATGGGATGCCTGGCGTAACTGTGAATGGAA 649
.||||||||.||.|..|||||.||.|||||.||.||.|||||..|.||||
RBAM_022330__ 600 ATCCGACCGGGCGGCAGGCTACGGCATGCCGGGAGTCACTGTTGACGGAA 649
BSNT_03580___ 650 ATGATCCGCTGGAAGTTTATCAAGCGGTCAAAGAAGCACGCGAAAGGGCA 699
|.||.|.||||||||||||.|..||.||.||||||||.||||||.||||.
RBAM_022330__ 650 ACGACCTGCTGGAAGTTTACCGGGCCGTAAAAGAAGCGCGCGAACGGGCG 699
BSNT_03580___ 700 CGCAGAGGAGAAGGCCCGACATTAATTGAAACGATTTCTTACCGCCTTAC 749
...|.|||.||||||||.||||||||.||||||.||||.|||||..|.||
RBAM_022330__ 700 TCTAAAGGCGAAGGCCCTACATTAATAGAAACGGTTTCCTACCGTTTGAC 749
BSNT_03580___ 750 ACCACATTCCAGTGATGACGATGACAGCAGCTACAGAGGCCGTGAAGAAG 799
|||.|||||||||||||||||.||||||||||||||||..||.|||||||
RBAM_022330__ 750 ACCGCATTCCAGTGATGACGACGACAGCAGCTACAGAGAACGCGAAGAAG 799
BSNT_03580___ 800 TAGAGGAAGCGAAAAAAAGTGATCCCCTGCTTACTTAT--CAAGCTTACT 847
||||.|||||.||.|||...|||||.||.||| |||| .||||.||||
RBAM_022330__ 800 TAGAAGAAGCAAAGAAACAAGATCCGCTTCTT--TTATACAAAGCATACT 847
BSNT_03580___ 848 TAAAGGAAACAGGCCTGCT--GTCCGATGAGATG--GAACAAACCATGCT 893
|.||.|||.|.||.||.|| || || |||.| |||.|.||||||||
RBAM_022330__ 848 TGAAAGAAGCCGGGCTTCTAGGT--GA--AGAAGAAGAAAAGACCATGCT 893
BSNT_03580___ 894 GGATGAAATTATGGCAATCGTAAATGAAGCGACGGATGAAGCGGAGAACG 943
||||||.||.|||||.||||||||.||||||||.||.|||||||||||.|
RBAM_022330__ 894 GGATGACATCATGGCTATCGTAAACGAAGCGACAGACGAAGCGGAGAAAG 943
BSNT_03580___ 944 CCCCTTATGCAGCTCCTGAGTCAGCGCTTGATTATGTGTATGCGAAGTAG 993
|.||.||.|||.|||||||.|||.||||||||.|.||.||||||||||||
RBAM_022330__ 944 CGCCATACGCATCTCCTGAATCAACGCTTGATCACGTTTATGCGAAGTAG 993
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