Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03573 and RBAM_022300
See
Amino acid alignment /
Visit
BSNT_03573 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:50
# Commandline: needle
# -asequence dna-align/BSNT_03573___bmrU.1.9828.seq
# -bsequence dna-align/RBAM_022300___bmrU.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03573___bmrU-RBAM_022300___bmrU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03573___bmrU-RBAM_022300___bmrU.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03573___bmrU
# 2: RBAM_022300___bmrU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 962
# Identity: 630/962 (65.5%)
# Similarity: 630/962 (65.5%)
# Gaps: 133/962 (13.8%)
# Score: 2023.5
#
#
#=======================================
BSNT_03573___ 1 ATGAGCCACCGGAAAGCGTTACTGATTCATAACGGAAATGCCGG-CAACA 49
||||||||.||||||||..||.|.|||.||||||||||.||||| ||| |
RBAM_022300__ 1 ATGAGCCAACGGAAAGCAGTATTAATTTATAACGGAAACGCCGGTCAA-A 49
BSNT_03573___ 50 AAAATATAGAAAAAGCACTTGGTGCTGTCGTGCCGGTTTTATCTCACCAT 99
||.|.||.||.|||.|.||.||..|.|||||.||..||||..| |||.
RBAM_022300__ 50 AACAGATTGATAAAACGCTCGGCACGGTCGTCCCCATTTTGGC---CCAG 96
BSNT_03573___ 100 TTAGATGAGG---TGATTATTAAACAGACAAAGAAAAAGGATGATGCGTA 146
|.||.|||.| |..|.|||||||.|||.||..|..||||||||||...
RBAM_022300__ 97 TCAGCTGACGAACTTTTGATTAAACCGACCAAACATCAGGATGATGCCCG 146
BSNT_03573___ 147 TCATTTTTGCCGATCCATTGATGATTCTGTCGACACCGTCTTC------- 189
|||.|.||| |||...|.|||||| .|||
RBAM_022300__ 147 TCAGTATTG------------TGAAAATCTCGACA----GTTCAGTTGAC 180
BSNT_03573___ 190 ---------ATTCTCGGCGGCGACGGCACGATCCATCAATGCAT-AAATG 229
|||.|.|||||.||||||||..|.||||||||||| ||..|
RBAM_022300__ 181 CATTTATATATTTTAGGCGGAGACGGCACTGTGCATCAATGCATCAACAG 230
BSNT_03573___ 230 CTATCAGCGCTCTAGAAAGAAAACCCGCGGTCGGAATTTTGCCCGGAGGC 279
| ||||||...||.||....|.||||||.|||||.||||||||.|||||.
RBAM_022300__ 231 C-ATCAGCAAGCTTGATCACAGACCCGCTGTCGGCATTTTGCCGGGAGGA 279
BSNT_03573___ 280 ACGTGCAATGACTTTTCAAGAGTGCTTGGCATCCCTCAAAATCTTGCAAA 329
||||||||.||.||.|||.|.|.|||.||||||||.|||||.|||..|||
RBAM_022300__ 280 ACGTGCAACGATTTCTCACGGGCGCTCGGCATCCCGCAAAACCTTCAAAA 329
BSNT_03573___ 330 GGCCGCGGAAGCACTTATGGCAGGAAATAAAACCAGCG-----TAGACGT 374
||||||.|||||.||...|||.|||.||||| || |.|||||
RBAM_022300__ 330 GGCCGCTGAAGCGCTCGCGGCCGGACATAAA-----CGGATGATTGACGT 374
BSNT_03573___ 375 ATGTCAGATGAATGACCGTTATTTTTTAAATTTCTGGGGGATCGGCTTAA 424
.|||.|.|.|.|||||.|.||||||.|.||.||||||||.|||||..|.|
RBAM_022300__ 375 CTGTAAAACGGATGACGGCTATTTTCTGAACTTCTGGGGCATCGGACTGA 424
BSNT_03573___ 425 TTGCAGAAACGTCGAATCAAATCAACGAAACGGAAAAAGCATTATTGGGA 474
|..|.|||.|.||.|..||.||.||.|||||.||||||||||...|.||.
RBAM_022300__ 425 TCACCGAAGCATCAAGCCATATTAATGAAACTGAAAAAGCATGGCTTGGT 474
BSNT_03573___ 475 AAAATCAGCTATTTTACAAGTGCGTTGCGAACCGTCTCATCCGCTGCA-T 523
|||||||||||.||.||.||.||.|||||.||..|..||..||| |.| .
RBAM_022300__ 475 AAAATCAGCTACTTCACGAGCGCCTTGCGGACGATGACAAGCGC-GAACC 523
BSNT_03573___ 524 CGTTTCCGATGACATTAAAAATTGACGG------AAAAGAAATTAAAGAA 567
|||||||..|.|.|||.|..|||||||| .|||| ||||.
RBAM_022300__ 524 CGTTTCCTGTCAAATTGACGATTGACGGCGAGGTGAAAG------AAGAC 567
BSNT_03573___ 568 GAAGCCGTTATGCTGCTTGTGATGAATGGCCAATACATTGGAACGAATCG 617
||||||||.|||.|||||||.|||||.||.||.||.||.||.||.||..|
RBAM_022300__ 568 GAAGCCGTAATGGTGCTTGTCATGAACGGGCATTATATCGGGACAAACAG 617
BSNT_03573___ 618 AATTCCTCTGCCCGATGCCAGTATTGAAGACGGCTTACTTGATGTTCTCA 667
|.||||.|||||.||||||||..|..|.|||||||||...|||||..|.|
RBAM_022300__ 618 AGTTCCCCTGCCTGATGCCAGCCTCCAGGACGGCTTAGCCGATGTGTTAA 667
BSNT_03573___ 668 TATGCCGCAACACCAACCTCACCGCGCTGCGGGAGCTGATGAGCATGGAA 717
|.|||||||||||.|.|||..|||||.|||||||||||||||..|||||.
RBAM_022300__ 668 TCTGCCGCAACACAAGCCTTGCCGCGTTGCGGGAGCTGATGACGATGGAG 717
BSNT_03573___ 718 CAGGGCTCAATTGATCGTTTTACCGGAGAGCTGTCCTATGTCCAGGCCTC 767
|||||.||..|||||..|||.|..||.||||||||||||.|.||||||||
RBAM_022300__ 718 CAGGGTTCGTTTGATGATTTCAAAGGGGAGCTGTCCTATATTCAGGCCTC 767
BSNT_03573___ 768 CCGTATCGAAATTGAAAC--------AGACACTGCCAAAAAGGCGGATAT 809
|.|.||.|||||.||||| ||| || .|.|||||||.
RBAM_022300__ 768 CAGGATTGAAATCGAAACCGGACGTGAGA---TG-----GACGCGGATAC 809
BSNT_03573___ 810 GGATGGAGAAGTTTATAC---ACATACACC---------CGCAGT----- 842
.|||||.||.| ||||| ||| ||||| ||.|||
RBAM_022300__ 810 AGATGGCGAGG--TATACGGAACA-ACACCTTGTACGATCGAAGTGAAAA 856
BSNT_03573___ 843 --CATTCAGGTCCTGCCGCAGCATATCGAC-ATGCTTGTTCCCG------ 883
||| |||.|| || |||.|||||||||
RBAM_022300__ 857 AACAT----------------CATCTC-ACTATGATTGTTCCCGAGGATT 889
BSNT_03573___ 884 CA-AATGGATAA 894
|| ||||.
RBAM_022300__ 890 CACAATGA---- 897
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.