Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03565 and RBAM_022260
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:49
# Commandline: needle
# -asequence dna-align/BSNT_03565___yqiZ.1.9828.seq
# -bsequence dna-align/RBAM_022260___yqiZ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03565___yqiZ-RBAM_022260___yqiZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03565___yqiZ-RBAM_022260___yqiZ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03565___yqiZ
# 2: RBAM_022260___yqiZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 730
# Identity: 573/730 (78.5%)
# Similarity: 573/730 (78.5%)
# Gaps: 14/730 ( 1.9%)
# Score: 2181.5
#
#
#=======================================
BSNT_03565___ 1 ATGATTAAGGTTGAAAAGCTGTCAAAATCATTTGGGAAACACGAAGTATT 50
|||||||||||.||.||.||||||||||||||.||||||||.||||||.|
RBAM_022260__ 1 ATGATTAAGGTCGACAACCTGTCAAAATCATTCGGGAAACATGAAGTACT 50
BSNT_03565___ 51 AAAAAACATTTCAACAACA-ATCGCTGAGGGTGAGGTTGTTGCCGTGATC 99
.|||||||||||||| ||| ||||..||.||.||.||.||.||.||.|||
RBAM_022260__ 51 GAAAAACATTTCAAC-ACAGATCGAAGAAGGGGAAGTCGTCGCTGTCATC 99
BSNT_03565___ 100 GGTCCTTCAGGCTCAGGCAAATCAACGTTCTTACGCTGTTTAAACCTGTT 149
||.|||||.||.||.||||||||||||||..|.|||||.|||||.|||.|
RBAM_022260__ 100 GGCCCTTCCGGTTCCGGCAAATCAACGTTTCTGCGCTGCTTAAATCTGCT 149
BSNT_03565___ 150 GGAAAAGCCTAACGGCGGAACCATTACAATAAAAGACACAGAGATTA-CG 198
.||||..||.|.|||||||||.|||.|.||.|||||.|..||.|||| ||
RBAM_022260__ 150 CGAAACCCCGAGCGGCGGAACGATTGCCATTAAAGAAAATGAAATTACCG 199
BSNT_03565___ 199 AAGCCAAAAACCAACACATTAAAGGTCCGGGAAAACATCGGGATGGTTTT 248
.|| |.|||||.||.|.|.|.||.||.||||||||.|||||.|||||.||
RBAM_022260__ 200 CAG-CTAAAACGAATAAACTGAAAGTGCGGGAAAATATCGGCATGGTATT 248
BSNT_03565___ 249 TCAGCATTTTCATCTCTTTCCGCACAAAACGGTTCTCGAAAACATCATGT 298
|||||||||||||.|.|||||.||.||||||||.||.|||||.||||..|
RBAM_022260__ 249 TCAGCATTTTCATTTGTTTCCTCATAAAACGGTGCTTGAAAATATCACAT 298
BSNT_03565___ 299 ACGCGCCTGTCAATGTAAAAAAAGAATC--AAAAC-AGGCTGCAAAGGAG 345
|||||||.||||..||.||.|||||.|| ||||| ||||.| ||||.
RBAM_022260__ 299 ACGCGCCGGTCAGCGTGAAGAAAGAGTCTAAAAACGAGGCGG---AGGAA 345
BSNT_03565___ 346 AAAGC-TGAGGACCTGCTCCGCAAAGTCGGTTTGTTTGAAAAGCGAAATG 394
||.|| || .|.|||.||....||||||||..||.||||.||.||.||.|
RBAM_022260__ 346 AAGGCGTG-CGCCCTCCTTGAAAAAGTCGGACTGCTTGACAAACGGAACG 394
BSNT_03565___ 395 ACTATCCAAACCGTTTGTCTGGCGGACAAAAACAGCGTGTCGCGATTGCC 444
|||||||.|||||||||||.||||||||.||.|||||.|||||.||.||.
RBAM_022260__ 395 ACTATCCGAACCGTTTGTCAGGCGGACAGAAGCAGCGGGTCGCCATCGCG 444
BSNT_03565___ 445 AGGGCTCTTGCGATGAATCCGGACATTATGCTGTTTGACGAGCCGACCTC 494
.|.||.|||||.||||||||.|||||.|||||||||||.||.||||||||
RBAM_022260__ 445 CGTGCGCTTGCCATGAATCCTGACATCATGCTGTTTGATGAACCGACCTC 494
BSNT_03565___ 495 CGCCCTTGATCCGGAGATGGTCAAAGAAGTGCTACAGGTGATGAAAGAGC 544
.||.|||||.|||||.||||||||||||||.||..|||||||||||||||
RBAM_022260__ 495 GGCTCTTGACCCGGAAATGGTCAAAGAAGTTCTTGAGGTGATGAAAGAGC 544
BSNT_03565___ 545 TGGTCG-AAACCGGCATGACCATGGTGATTGTCACACATGAAATGGGCTT 593
|.| || |.||.||||||||.|||||.||.||.||.||.||||||||.||
RBAM_022260__ 545 TCG-CGCAGACGGGCATGACGATGGTTATCGTAACGCACGAAATGGGATT 593
BSNT_03565___ 594 CGCAAAAGAAGTGGCAGACCGCGTGCTGTTTATGGACCAAGGAATGATTG 643
.||.||||||||||||||||||||..|.||.|||||..||||.|.|||.|
RBAM_022260__ 594 TGCCAAAGAAGTGGCAGACCGCGTATTATTCATGGATGAAGGGACGATCG 643
BSNT_03565___ 644 TCGAGGACGGCAATCCGAAGGAATTTTTTATGTCGCCAAAATCCAAAAGA 693
|.||.|||||..|.|||.|.|||||||||.|.||.||.||.||.||||||
RBAM_022260__ 644 TGGAAGACGGGCAGCCGGAAGAATTTTTTCTTTCTCCGAAGTCAAAAAGA 693
BSNT_03565___ 694 GCGCAGGACTTTTTAGAGAAAATATTATAG 723
||.||||||||||||||.|||||||||||.
RBAM_022260__ 694 GCACAGGACTTTTTAGAAAAAATATTATAA 723
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