Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03564 and RBAM_022250
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:49
# Commandline: needle
# -asequence dna-align/BSNT_03564___yqjA.1.9828.seq
# -bsequence dna-align/RBAM_022250___yqjA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03564___yqjA-RBAM_022250___yqjA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03564___yqjA-RBAM_022250___yqjA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03564___yqjA
# 2: RBAM_022250___yqjA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 971
# Identity: 761/971 (78.4%)
# Similarity: 761/971 (78.4%)
# Gaps: 19/971 ( 2.0%)
# Score: 3001.0
#
#
#=======================================
BSNT_03564___ 1 ATGTTTAAAATTGGTTATCGCACAATAAAGACCGCGCTAGGAACAGCTTT 50
|||||||||||.|||||.||||||.||||||||||.||.|||||.||..|
RBAM_022250__ 1 ATGTTTAAAATCGGTTACCGCACACTAAAGACCGCACTTGGAACGGCGCT 50
BSNT_03564___ 51 GGCTATTTATATAAGCCAGTTATTGCATTTGCAAAACTTCGCATCAGCAG 100
|||.||||||.||..||||.|.||||||.||||||||||||||||.||||
RBAM_022250__ 51 GGCCATTTATTTAGCCCAGCTGTTGCATCTGCAAAACTTCGCATCCGCAG 100
BSNT_03564___ 101 GAATCATCACCATTTTGTGCATACAAATCACACAAAAACGGTCGCTTCAG 150
|||||||||||||.||||||||.||.||.||.|||||.||||||||||||
RBAM_022250__ 101 GAATCATCACCATATTGTGCATTCAGATTACGCAAAAGCGGTCGCTTCAG 150
BSNT_03564___ 151 GCCTCATGGGCCCGCTTTGCGGCATGTTGTCTGGCAATTGTTTTTTCTTA 200
|||||.||||||||.|||||.||.||||...||||.||.||.||.||.||
RBAM_022250__ 151 GCCTCGTGGGCCCGATTTGCCGCCTGTTTATTGGCGATCGTCTTCTCATA 200
BSNT_03564___ 201 TCTCTTTTTCGAGCTTATTGGCTACCACCCGTTTGTTATCGGAGCGCTTC 250
|.|||||||||.|||.||.|||||..|.|||||||..||||||....|.|
RBAM_022250__ 201 TGTCTTTTTCGGGCTGATCGGCTATTATCCGTTTGCGATCGGAATATTGC 250
BSNT_03564___ 251 TTTTGATATTCATTCCGATAACGGTTCTGTTAAAAATTAACGAAGGTATC 300
|..||.|.||||||||||..||.||..|.||||||||.||||||||.||.
RBAM_022250__ 251 TGGTGCTGTTCATTCCGACTACAGTCGTTTTAAAAATAAACGAAGGAATT 300
BSNT_03564___ 301 GTCACCAGTTCCGTTATTATCCTTCATTTATACATGTCCGGCGGCATTAC 350
||||||||.||.||.||.||.|||||||||||.|||||||||||||||||
RBAM_022250__ 301 GTCACCAGCTCAGTAATCATTCTTCATTTATATATGTCCGGCGGCATTAC 350
BSNT_03564___ 351 GCTTGCTTTCATCTGGAATGAAGTT-CAGCTGATTACGGTTGGCATCGGC 399
|.|.||.||.|||||||||| |||| ||||||||.||.||.||.||||||
RBAM_022250__ 351 GATGGCGTTTATCTGGAATG-AGTTCCAGCTGATCACCGTAGGTATCGGC 399
BSNT_03564___ 400 GTCGCTCTATTGATGAACTTGTATATGCCTAGTCTTGACCGGAAACTGAT 449
|||||.||.||.|||||..||||||||||.||.||.|||.|.|||||...
RBAM_022250__ 400 GTCGCGCTGTTAATGAATCTGTATATGCCGAGCCTCGACAGAAAACTCGC 449
BSNT_03564___ 450 TGCCTACCGCAAAAAGATAGAGGATAACTTTGCTGTCATTTTTGCAGAAA 499
.||.|||||.|||||.||.|||||.||||||.|.|||||.||.||.||||
RBAM_022250__ 450 GGCATACCGGAAAAAAATTGAGGACAACTTTTCCGTCATCTTCGCCGAAA 499
BSNT_03564___ 500 TCGAACGGTATTTGTTAACTGGTGAGCAAGATTGGTCAGGAAAAGAAATT 549
|||||||||||||||||||||||||||||||||||||.||.||.|||||.
RBAM_022250__ 500 TCGAACGGTATTTGTTAACTGGTGAGCAAGATTGGTCGGGGAAGGAAATA 549
BSNT_03564___ 550 CCGGAAACGCACCAGCTCATTACGGAGGCTAAAAACCTGGCATATCGAGA 599
|||||.|||||.|||.|.|||...|||||.||||||||.||.|||||.||
RBAM_022250__ 550 CCGGAGACGCATCAGATGATTCAAGAGGCGAAAAACCTCGCCTATCGGGA 599
BSNT_03564___ 600 TGTGCAAAACCACATTTTGCGTTATGAAAATCTGCATTATCATTATTTTA 649
.|||||.||.||.||||||||..||||||||||..|.|||||||||||||
RBAM_022250__ 600 CGTGCAGAATCATATTTTGCGCCATGAAAATCTTTACTATCATTATTTTA 649
BSNT_03564___ 650 AAATGAGAGAAAAGCAATTTGAAATTATCGAACGCCTTCTCCCTAAAGTG 699
|.||||||.|.||.|||||||||||.||.|||||.||.||.||.||..|.
RBAM_022250__ 650 AGATGAGACAGAAACAATTTGAAATCATTGAACGGCTGCTGCCGAAGATT 699
BSNT_03564___ 700 ACATCGATCTCCATTACGGTAGATCAGGGAAAAATGATCGCTGAATTTAT 749
||.||.||.||.||.|||||.||.|||||.|||||.|||||..|.||.||
RBAM_022250__ 700 ACCTCTATTTCAATAACGGTGGAGCAGGGCAAAATAATCGCCCATTTCAT 749
BSNT_03564___ 750 TCATGATTTGCGGGAGGCGATACACCCTGGGAATACAGCGTACAAATTTC 799
.|||||.||..||||.||.||.||.||.||.|||||.||..|.||||||.
RBAM_022250__ 750 CCATGAATTAAGGGAAGCCATTCATCCCGGCAATACCGCTCATAAATTTT 799
BSNT_03564___ 800 TGAAAAGACTTGCTGACATGAGAAAAGAATTTGAGGAGATGCCGCTTCCG 849
|.|||||||||||.||.|||||||..||||||||.||.||||||||.|||
RBAM_022250__ 800 TAAAAAGACTTGCAGAAATGAGAACGGAATTTGAAGAAATGCCGCTCCCG 849
BSNT_03564___ 850 GCGACTAGAGAGGAATTTGAAGCAAGGGCCGCTCTCTTCCATCTTCTCGG 899
||.||..|.|||||.||||||||..||||.|||.|.||||||||.|||||
RBAM_022250__ 850 GCAACGCGCGAGGAGTTTGAAGCGCGGGCGGCTTTGTTCCATCTCCTCGG 899
BSNT_03564___ 900 CGAAATGGAACAATATTTAGTGATTAAAAGTTATTTTAAAGGAATAAAAG 949
.||.||||||||||||.|.|||||||||||||||||.|||||.|| .|||
RBAM_022250__ 900 TGAGATGGAACAATATCTCGTGATTAAAAGTTATTTCAAAGGCAT-CAAG 948
BSNT_03564___ 950 C-GCAAAAATCACTCGGATGA 969
| |.||
RBAM_022250__ 949 CTGTAA--------------- 954
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