Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03561 and RBAM_022230
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:49
# Commandline: needle
# -asequence dna-align/BSNT_03561___yqjC.1.9828.seq
# -bsequence dna-align/RBAM_022230___yqjC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03561___yqjC-RBAM_022230___yqjC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03561___yqjC-RBAM_022230___yqjC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03561___yqjC
# 2: RBAM_022230___yqjC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 473
# Identity: 290/473 (61.3%)
# Similarity: 290/473 (61.3%)
# Gaps: 94/473 (19.9%)
# Score: 809.5
#
#
#=======================================
BSNT_03561___ 1 ATGAACAGGCTTGACCATATCGGGATAGCCGTTTTTTCGATAAAAGATGC 50
|||||.|..|||||.|||.||||.||.|||||....||.||..|||.|||
RBAM_022230__ 1 ATGAAAAAACTTGATCATGTCGGCATTGCCGTCAGCTCTATTGAAGCTGC 50
BSNT_03561___ 51 AAGAAGCTTTTATGAA--AATGTATTGGGGCTTGCATTTCTTCATCAAGA 98
.|||.|.|||||.||| .||| .|.||||||.|.|.|.| ..||
RBAM_022230__ 51 GAGAGGATTTTACGAACGGATG--CTCGGGCTTACGTATAT-----GGGA 93
BSNT_03561___ 99 AACG-----GTTGAAGAG--CAAAAGGTGAATGTTGCTTTTTTTCAAGCT 141
.||| || |||.| |||||.||||..|||||||||||..||||
RBAM_022230__ 94 GACGAGCTAGT--AAGCGGCCAAAATGTGAGAGTTGCTTTTTTAGAAGC- 140
BSNT_03561___ 142 GGTAGCGTCAAA-CTTGAGCTGATAGAGCCGTTGACAGCTGACAGC---- 186
||.||...|||| |||||||||||.||||||.|| .|.||| ||
RBAM_022230__ 141 GGGAGGCACAAAGCTTGAGCTGATTGAGCCGCTG---TCGGAC-GCGTCT 186
BSNT_03561___ 187 CCCGTCCGTTTATTTTTGGAGAAGAAAGGGCAGGGACTGCATCATATTGC 236
||||||.|.|..|||||..|||..|.|||..|.||||||||||||.|.||
RBAM_022230__ 187 CCCGTCAGCTCTTTTTTACAGATAAGAGGTGAAGGACTGCATCATTTGGC 236
BSNT_03561___ 237 GTTTTTGTGCAACGGCCTATCTGAA-------------CAGCTTCAAGCA 273
.||....||| |||.||.|||| .|||||.|||||
RBAM_022230__ 237 ATTCCGCTGC----GCCGATATGAAGGAAACGATCAAGGAGCTTGAAGCA 282
BSNT_03561___ 274 TTGTCTGACCGGCATGTTCAA--TTGAT------TG-ACAGGTTTCCAAG 314
| .|.||||| | ||||| || ||.| |||.
RBAM_022230__ 283 T-------GCCGCATG----ACTTTGATCCATCATGAACCG-----CAAA 316
BSNT_03561___ 315 ACAGGGGGCGAACGGGAAAAAGATCGCGTTTATTTCCCCTCGGGAAA--- 361
|| ||.|||..||||||.||||||||.|||.|.||.|| |||
RBAM_022230__ 317 AC--GGAGCGGGCGGGAAGAAGATCGCATTTCTCTCTCC-----AAAAGA 359
BSNT_03561___ 362 --CAAACGGTGTTCTTGTAGAGCTTTGTGAACC------GAAAGGAGA-- 401
|.|||||.||.||..|.||||||||||||.| .||||||||
RBAM_022230__ 360 GGCGAACGGGGTCCTGATTGAGCTTTGTGAAACAATTGAAAAAGGAGAAA 409
BSNT_03561___ 402 -TCAACAGAATGAACATGAATGA 423
|||| .||||.|||||.|||
RBAM_022230__ 410 CTCAA---GATGAGCATGAGTGA 429
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