Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03558 and RBAM_022220
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:49
# Commandline: needle
# -asequence dna-align/BSNT_03558.1.9828.seq
# -bsequence dna-align/RBAM_022220___yqjD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03558-RBAM_022220___yqjD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03558-RBAM_022220___yqjD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03558
# 2: RBAM_022220___yqjD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1548
# Identity: 859/1548 (55.5%)
# Similarity: 859/1548 (55.5%)
# Gaps: 447/1548 (28.9%)
# Score: 3143.0
#
#
#=======================================
BSNT_03558 0 -------------------------------------------------- 0
RBAM_022220__ 1 ATGAGCATGAGTGATCATATCAGACACTTAAACGAAAGACGTTCCTTTTT 50
BSNT_03558 0 -------------------------------------------------- 0
RBAM_022220__ 51 AACAAACGGCGGCGGAGCGGAAAAAAATGAAAAACAGCACAAAAAAGGCA 100
BSNT_03558 0 -------------------------------------------------- 0
RBAM_022220__ 101 AGCTGACGGCAAGAGAAAGAATTGACTATTTATTGGACGAAGACAGTTTT 150
BSNT_03558 0 -------------------------------------------------- 0
RBAM_022220__ 151 TCAGAGCTGCAGCCGTTTGCCAAAAGCTGCATGCCCGGATGCCAGAATGC 200
BSNT_03558 0 -------------------------------------------------- 0
RBAM_022220__ 201 TCCGGGAGACGGCGTTGTTACCGGATACGGCACAATTGACGGACGGCCCG 250
BSNT_03558 0 -------------------------------------------------- 0
RBAM_022220__ 251 TGTATTTGTTTGCCCATGACTTTACCGTACTCGGCGGGACGCTCGGCGAG 300
BSNT_03558 0 -------------------------------------------------- 0
RBAM_022220__ 301 ACACATGCGGAAAAAATCGCGGCGGTAATGGATCTGGCGGCGAAAAATAA 350
BSNT_03558 0 -------------------------------------------------- 0
RBAM_022220__ 351 AACTCCGATCATCGGGCTGAACGACTCAGGTGGTGCGAGAATTCAAGAGG 400
BSNT_03558 1 --GTGGTATCATTAGATGGATACGGTCACATATTTTACCGAAACGTCTTA 48
||||||||||||.|||||||||||||.||.|||...||.||||||.|.
RBAM_022220__ 401 GTGTGGTATCATTAAATGGATACGGTCATATCTTTAGGCGCAACGTCCTT 450
BSNT_03558 49 TATTCCGGAGTCATTCCGCAAATATCGGTTATTTTAGGGCCGTGCGCTGG 98
||.||.|||||.|||||||||||.||.||.||..|.||||||||.||.||
RBAM_022220__ 451 TACTCGGGAGTGATTCCGCAAATCTCTGTCATCCTTGGGCCGTGTGCCGG 500
BSNT_03558 99 AGGCGCTGTATATTCTCCGGCACTCACAGATTTTATATTTATGGCTGAAC 148
.||.|||||.|||||.||.|||.|.||.||||||.|..|||||||.||||
RBAM_022220__ 501 CGGTGCTGTTTATTCACCCGCATTGACGGATTTTGTGATTATGGCGGAAC 550
BSNT_03558 149 AGAC--CGGCCGGATGTTTATTACCGGCCCGAAGGTGATTGAAAAAGTGA 196
|.|| || |..|||||||||||.||||||||.||.||||||.|.||.|
RBAM_022220__ 551 ATACGTCG--CACATGTTTATTACAGGCCCGAAAGTCATTGAACAGGTTA 598
BSNT_03558 197 CAGGGGAACAGGTTGATGCGGAGAGCTTAGGCGGAGCGGGGATACATAAT 246
|.||.||||||.||||.|||||.||.||||||||.|||||.|||||||||
RBAM_022220__ 599 CGGGTGAACAGATTGACGCGGAAAGTTTAGGCGGTGCGGGTATACATAAT 648
BSNT_03558 247 GCCGTCAGCGGAAACGCGCACTTTTCCGGACATACGGAGAAGGAGGTTCT 296
|...|.||||||||.||.||||.|||||.||..|||||.||.||||.|||
RBAM_022220__ 649 GTGATAAGCGGAAATGCCCACTATTCCGCACGAACGGAAAAAGAGGCTCT 698
BSNT_03558 297 GACAGGGGTGAGAAAACTGCTGTCTTATTTGCCGCTGAATGGCCGGACA- 345
..|.|..||||.||..|||||.||||||.|.|||| |.|| ||||||
RBAM_022220__ 699 TTCCGCTGTGAAAACCCTGCTTTCTTATCTCCCGC---ACGG-CGGACAG 744
BSNT_03558 346 ACAG----AGCCG--AAGCCAGAGAAAGAGGCGTCCAGACCGTTATTAAA 389
||.| |.||| || |.||.||||.| ||||||||||||||||
RBAM_022220__ 745 ACGGCATCACCCGTTAA---AAAGGAAGACG---CCAGACCGTTATTAAA 788
BSNT_03558 390 CCGTCTTGTCCCTGCTGATACGACAAAGCCTTATGATGTTCGGAAGGTGA 439
|...||.||.||.||.||.|...|.||.|||||.|||||.....||||.|
RBAM_022220__ 789 CACCCTCGTTCCCGCGGACAGTTCGAAACCTTACGATGTGTTACAGGTAA 838
BSNT_03558 440 TCAGGGAGCTGGCCGA-CCCGCAGACTTTTTTTGAGCTTCAGCCATTTTT 488
|.|..||||||||.|| ..||.| ||.||||||||..|||||||.|.|||
RBAM_022220__ 839 TAAAAGAGCTGGCGGATGACGGA-ACGTTTTTTGACATTCAGCCGTATTT 887
BSNT_03558 489 TGCGAAGAACATTGTCATTGGGTTTGCAAGGCTGGGTGAAA-----AAG- 532
|||.||.||||||| |..|.|||||.| ||||| |.|
RBAM_022220__ 888 TGCCAAAAACATTG-CTGTCGGTTTTC---------TGAAACTCGGACGG 927
BSNT_03558 533 ----CAATCGGCATCGTGGCGAGCCAGCCGAAGCATCTGGCGGGAAGCCT 578
||.||||..|.||.||.|.|||||||||.||..|||||||.|||||
RBAM_022220__ 928 CGTACAGTCGGTGTTGTCGCAAACCAGCCGAAACACTTGGCGGGGAGCCT 977
BSNT_03558 579 GACGATTGACGCTGCTGATAAAGCAGCAAGGTTCATCCGTTTTTGTGACG 628
.||||||||.||.|||||.|||||..|.||.||||||||||||||.||||
RBAM_022220__ 978 CACGATTGATGCCGCTGACAAAGCGTCGAGATTCATCCGTTTTTGCGACG 1027
BSNT_03558 629 CATTTGATATCCCGTTGTTGACTGTCGAAGATGTCCCGGGGTTTCTGCCG 678
|.|||.||||.|||.|.|||||..|||..|||||.|||||.|||||.|||
RBAM_022220__ 1028 CGTTTCATATTCCGCTATTGACGATCGCTGATGTTCCGGGATTTCTTCCG 1077
BSNT_03558 679 GGTATTCAGCAAGAGCACAACGGAATCATCAGGCATGGAGCAAAATTATT 728
||..|||||||.||.||....|||||||||.|.||.|||||||||||..|
RBAM_022220__ 1078 GGCTTTCAGCAGGAACATGCGGGAATCATCCGTCACGGAGCAAAATTGCT 1127
BSNT_03558 729 GTTTGCTTATGCTGAAGCGACTGTCCCAAAAGTCACACTCATCATTAGAA 778
||.|||||.|||.||||||||.||.||.|||||.||.||||||||.||||
RBAM_022220__ 1128 GTATGCTTTTGCCGAAGCGACGGTGCCGAAAGTGACGCTCATCATCAGAA 1177
BSNT_03558 779 AAGCGTACGGCGGCGCCTATGTGGCCATGAACAGCAAAGCGATCGGAGCG 828
||||.|||||.|||||||||||.||||||||....||||.|.||||.||.
RBAM_022220__ 1178 AAGCTTACGGAGGCGCCTATGTCGCCATGAATTCGAAAGGGCTCGGGGCA 1227
BSNT_03558 829 GACCTTGTGTTTGCATGGCCGAATGCTGAAATCGCAGTGATGGGTCCAGA 878
||.|||||.||.||.|||||.|||||.||||||||.||||||||..|.||
RBAM_022220__ 1228 GATCTTGTATTCGCCTGGCCCAATGCGGAAATCGCCGTGATGGGAGCGGA 1277
BSNT_03558 879 AGGTGCGGCATCGATTTTGTATGAAAAG-GAAATCAAAGCTTCAGCTGAC 927
|||.|||||.||||||||.|| .|..|| ||.||..|.|||||.|..|||
RBAM_022220__ 1278 AGGCGCGGCGTCGATTTTATA-CAGCAGAGACATACAGGCTTCTGACGAC 1326
BSNT_03558 928 CCGCAAAAGACGAAACGCGAAAAAACAGCTGAATACAAAAAGCAAAACGC 977
|||.|.||.|||||.||||||||||.|||...||||.|||||.|||||||
RBAM_022220__ 1327 CCGGAGAAAACGAAGCGCGAAAAAAAAGCCATATACGAAAAGGAAAACGC 1376
BSNT_03558 978 CGGCCCATACAAAGCGGCCGCTTGTGGAATGGTCGATGACATCATTTTGC 1027
|||.||.||.||||||||.||.||.||||||||.|||||.|||||...||
RBAM_022220__ 1377 CGGTCCGTATAAAGCGGCGGCCTGCGGAATGGTGGATGATATCATCCGGC 1426
BSNT_03558 1028 CGGAAGAATCAAGGGGAAAACTGATTCAAGCTTTTCATATGCTTGCACAT 1077
|||||||.||.|||..||||.|||||||.||.|||.|.||||||||.|||
RBAM_022220__ 1427 CGGAAGACTCGAGGAAAAAATTGATTCAGGCATTTGACATGCTTGCGCAT 1476
BSNT_03558 1078 AAGACAGAAGAGAGACCGAAAAAAAAGCACGGTAACATACCGCTTTAA 1125
|||..|||.||.|||||||||||||||||||||||.||||||||||||
RBAM_022220__ 1477 AAGGAAGAGGAAAGACCGAAAAAAAAGCACGGTAATATACCGCTTTAA 1524
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