Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home
About
Genes
DNA alignment: BSNT_03545 and RBAM_022130

See Amino acid alignment / Visit BSNT_03545 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:48
# Commandline: needle
#    -asequence dna-align/BSNT_03545___yqjL.1.9828.seq
#    -bsequence dna-align/RBAM_022130___yqjL.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03545___yqjL-RBAM_022130___yqjL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03545___yqjL-RBAM_022130___yqjL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03545___yqjL
# 2: RBAM_022130___yqjL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 804
# Identity:     544/804 (67.7%)
# Similarity:   544/804 (67.7%)
# Gaps:          72/804 ( 9.0%)
# Score: 1675.5
# 
#
#=======================================

BSNT_03545___      1 ATGAAATCAGCTTGGATGGAAAAGACATATACAATTGACGGATGTGCGTT     50
                     ||||||.||||.||||||||||.|||||||...||||||||.|||.||||
RBAM_022130__      1 ATGAAAGCAGCATGGATGGAAAGGACATATCTGATTGACGGGTGTCCGTT     50

BSNT_03545___     51 TCATACACAGCACCGGAAAGGATCAAGCGGTGTAACGATTGTCTTTGAGG    100
                     |.||||..|.|||||.|||||..|..|||..||.|||||.||||||||.|
RBAM_022130__     51 TTATACGAAACACCGTAAAGGCGCCGGCGAAGTGACGATCGTCTTTGAAG    100

BSNT_03545___    101 CCGGCTATGGTACTTCTTCTGAGACGTGGAAACCATTAATGGCGGACATT    150
                     |||||||.||.|||||||||||.||.||||.|.|||||.|.||.|||||.
RBAM_022130__    101 CCGGCTACGGCACTTCTTCTGAAACATGGACATCATTACTCGCTGACATA    150

BSNT_03545___    151 GATGATGAATTTGGCATTTTCACATATGATCGGGCAGGCATAGGAAAAAG    200
                     |||||.||||||||..|||||||||||||..|.||.||.||.||.|||||
RBAM_022130__    151 GATGAAGAATTTGGGGTTTTCACATATGACAGAGCCGGAATCGGCAAAAG    200

BSNT_03545___    201 CGGGCAAAGCAGAGCTAAAC----GAACAGCTGATCAACA-AGTGAAAGA    245
                     |||.||||||    |.||||    ||||.||.|| |.||| .||..|.||
RBAM_022130__    201 CGGACAAAGC----CGAAACAAGAGAACGGCGGA-CCACATGGTACAGGA    245

BSNT_03545___    246 ATTGGAGAGTTTGCT--TAAAGCAGCTGATGTAAAACCTCCTTAT-TTGG    292
                     |||..|...|.|.||  |.|||  ||.|..||.||.||||||||| |||.
RBAM_022130__    246 ATTAAACGCTCTTCTTCTGAAG--GCCGGCGTCAAGCCTCCTTATCTTGT    293

BSNT_03545___    293 CTGTTTCACACTCATACGGAGCTGTCATCACCGGTTTATGGGCCTGCAAA    342
                     | ||.||.||.||||||||.||..|.||||.|.|..|||||||..||...
RBAM_022130__    294 C-GTCTCGCATTCATACGGCGCGATTATCAGCAGACTATGGGCGAGCCGG    342

BSNT_03545___    343 AACAAGTATGATATTATCGGCATGGTCCTTCTTGACCCAGCTTT------    386
                     |||......||||||.||||.|||||..|.|||||.|| |.|||      
RBAM_022130__    343 AACCGCCGGGATATTCTCGGGATGGTGATGCTTGATCC-GGTTTCTGAGG    391

BSNT_03545___    387 ------AGGCG--ATTGCGCCAGCTTTACCTTTATACCCGAAGAAATGCA    428
                           ||.||  |.|||..|.||||   |||    ||||||||||||.|
RBAM_022130__    392 ATCAGGAGACGAAAGTGCTTCCGCTT---CTT----CCCGAAGAAATGAA    434

BSNT_03545___    429 --CAGATCACATACGAGAAAGATGATGCTTGAGGGCACACATGCAGAGTT    476
                       |.|  |..||..||.|.||.|.||..|.||.||..||||.||.||.||
RBAM_022130__    435 AGCCG--CCTATTTGAAACAGTTCATATTGGAAGGATCACACGCGGAATT    482

BSNT_03545___    477 TTCAAAAAGTCTGCAGGAGCTCAAAAAGCGGCAAGTCCACTTAGGAAACA    526
                     ||..|..||.||.|...||.||||..|.|.|||..|.||.||.||..|.|
RBAM_022130__    483 TTTGACGAGCCTTCGTCAGATCAAGCATCAGCAGATTCATTTCGGCGATA    532

BSNT_03545___    527 TGCCTCTTCTTG-TGTTGTCATCAGGAGAACGGACTGAG------AAATT    569
                     ||||.| |.||| |.||.|||||.|||||.|||..||||      ||...
RBAM_022130__    533 TGCCGC-TGTTGATTTTATCATCGGGAGAGCGGGATGAGCGTTTAAAGCA    581

BSNT_03545___    570 CGCTGCTGAACA--GGAGTGGCAAAACTTGCACAGCAGCAT-----ATTG    612
                     ||||..||||||  || |||   |||| |||||||.|||||     | ||
RBAM_022130__    582 CGCTCATGAACAATGG-GTG---AAAC-TGCACAGAAGCATGCTTGA-TG    625

BSNT_03545___    613 TCTC-TATCTAACCAAAGCGGCTGGATTCAAGCTAAAAACAGCTCCCACA    661
                     |||| |||     ||||||||.||||||||.||.||||||||.||.||..
RBAM_022130__    626 TCTCTTAT-----CAAAGCGGATGGATTCAGGCCAAAAACAGTTCTCATG    670

BSNT_03545___    662 ACATCCATCATGATGAACCTCATATCGTTCACTTGGCTATTTATGACGTA    711
                     .|||.||.||.||||||||.||.|||||.|||.|.||.||||||||.||.
RBAM_022130__    671 CCATTCACCACGATGAACCGCACATCGTCCACCTTGCCATTTATGATGTT    720

BSNT_03545___    712 TGGTGCGCAGCGTGCCAGCA---GGCCGCTCCTCTTTACCAGGCAGTCAA    758
                     ||||||||.|...|||||||   |...||||||...||.|||||.||.||
RBAM_022130__    721 TGGTGCGCGGTACGCCAGCAAATGAATGCTCCTGCCTATCAGGCGGTAAA    770

BSNT_03545___    759 TTAA    762
                     .|.|
RBAM_022130__    771 CTGA    774


#---------------------------------------
#---------------------------------------
Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03545 and RBAM_022130

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
