Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03537 and RBAM_021920
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:47
# Commandline: needle
# -asequence dna-align/BSNT_03537___yqjP.1.9828.seq
# -bsequence dna-align/RBAM_021920___yqjP.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03537___yqjP-RBAM_021920___yqjP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03537___yqjP-RBAM_021920___yqjP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03537___yqjP
# 2: RBAM_021920___yqjP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1043
# Identity: 652/1043 (62.5%)
# Similarity: 652/1043 (62.5%)
# Gaps: 169/1043 (16.2%)
# Score: 1869.5
#
#
#=======================================
BSNT_03537___ 1 ATGACAACTG---AAGATGTAATTGCGATCCGCGTCCCGACGCCGTTTGC 47
|||.||.| | |||| |.|||.||||.||.||.|||||.||||||||
RBAM_021920__ 1 ATGGCAGC-GAGAAAGA--TCATTCCGATACGTGTGCCGACTCCGTTTGC 47
BSNT_03537___ 48 TGTCGGTGATGTTATCGTTTACCTCGTAAAAGGTGATGCACTGACACTTA 97
.|||||.||.|||||||||||..|.|||||||.|||.||.||.||.||||
RBAM_021920__ 48 AGTCGGCGACGTTATCGTTTATTTAGTAAAAGATGAAGCCCTAACCCTTA 97
BSNT_03537___ 98 TTGA-TGCAGGGCCGAATACAAAAGAGGCTGC-----------CAGAGC- 134
|||| ||| ||.|||||||||||.||.||.|| ||..||
RBAM_021920__ 98 TTGATTGC-GGCCCGAATACAAAGGAAGCGGCTGAATCGCTCTCATTGCA 146
BSNT_03537___ 135 -CTTACAAGAGCA---GCTTGCCGCTGTAAATGTGAAATTGTCAGATATC 180
|||| |.||.|| |.||.|.|| |.|.|||||.
RBAM_021920__ 147 GCTTA-AGGAACACGGGGTTTCTGC---------------GGCGGATATA 180
BSNT_03537___ 181 GAGCAGGTTGTACTGACTCACCATCATGCTGATCATGCAGGCTTGCTTGA 230
||.|||||.||.||.|||||.|||||.||.||||||.||||..||||..|
RBAM_021920__ 181 GAACAGGTGGTGCTCACTCATCATCACGCAGATCATTCAGGTCTGCTGCA 230
BSNT_03537___ 231 TGTCTTTTCAGATGAAATCGAAGTGATTGGGCATGCATTCAACGA----- 275
..|.|||||.||.||.|..||||||||.||.|||.|..|.||.||
RBAM_021920__ 231 CCTTTTTTCTGAGGATACGGAAGTGATCGGACATCCGCTGAATGACAGGT 280
BSNT_03537___ 276 ACCTTATATCAGCCGAAATCAAGCCTTTATGGATTGGCAAAAACGTTTTT 325
||.||| .|||| ||.||..|.|.|||.|...||||..|...|||||
RBAM_021920__ 281 ACATTA-CTCAG----AACCAGTCGTATATCGCCCGGCAGGAGGATTTTT 325
BSNT_03537___ 326 TTCAAAAGCTGCTGCCTGAATTAGGCGTTCCATTTGATACGGGGAAGGCG 375
|||....|||..||.|.|||.|.||||||||..| ||.|.|.
RBAM_021920__ 326 TTCTGTCGCTTATGACAGAAATGGGCGTTCCTCT---------GACGCCC 366
BSNT_03537___ 376 GAA------------------AAGCTGATGCGATCAGCGTACGCATTTTC 407
||| |||||| ||| |||..||||||
RBAM_021920__ 367 GAAGACATACATAAAACAGTTAAGCTG------TCA---TACTTATTTTC 407
BSNT_03537___ 408 ------CTGTACGAGATCTCTGACAAAATCAATCAGAGAAGGTATGGG-- 449
|.||.|| .|.||.|||.||.|.||.||||| .||
RBAM_021920__ 408 TGCAAACCGTCCG------TTAACGAAAACAGTGAGGGAAGG---CGGAA 448
BSNT_03537___ 450 -CATAGATGGGCTTGAGGGCTGGTCTGTGTTGGAGATGCCTGGACATGCT 498
.||.||.||||||.|.||||||.|.|||.|.||.||.||.||.|||||.
RBAM_021920__ 449 AAATTGACGGGCTTAACGGCTGGACGGTGCTCGAAATCCCGGGTCATGCC 498
BSNT_03537___ 499 GAATCGCATATCGTTCTGTTCCATGAAAAAAGCG--GAAGGATGCTTGGC 546
|..||.||.||.|..||.|.|||||||||||||| ||| |||.|..||
RBAM_021920__ 499 GCTTCTCACATTGCGCTCTACCATGAAAAAAGCGGTGAA--ATGTTCAGC 546
BSNT_03537___ 547 GGCGATCTACTGCTGGCCAACAGCTCGTCTAATCCGATTTTGGAAGCGCC 596
||||||||.||..||.||||||||||..|.|||||||||.|||||||.||
RBAM_021920__ 547 GGCGATCTGCTTTTGTCCAACAGCTCCACCAATCCGATTCTGGAAGCTCC 596
BSNT_03537___ 597 G--AAAGCGGGAGACGTCAGGTCAAAGCCTTTAGTGGATTA--TCAGCGG 642
| ||||.|.|.| ||...||.| ||..|..|.||.|| |.|.|
RBAM_021920__ 597 GGAAAAGGGCGTG-CGCGCGGCC----CCGATGCTCGACTACTTGAAC-- 639
BSNT_03537___ 643 TCATTGCGAA--GGCTGTCTCAACTTGATCCAACAATCG-------TATT 683
|||.| ||| ||||||.| .||.|.|.|| || |||.
RBAM_021920__ 640 TCAAT--GAAGCGGCTGTAT-GACGTAAACC------CGTCCTTTTTATA 680
BSNT_03537___ 684 TCCTGGTCACGGCGAGCCTATCACCAG-TGTACAAGCGCTG--ATTGAGA 730
|||.||.||||||||.|...|.| ||| .||| |||| ||| .||||.|
RBAM_021920__ 681 TCCGGGACACGGCGATCTGCTGA-CAGACGTA-AAGC-CTGCTTTTGACA 727
BSNT_03537___ 731 AGCGTTTTGACAAGCAGAGGAACAGGACGGAGGATGTGCGTCGCATGCTG 780
.|||..||||.||.|||||.||..||.||||..||||||..|||.||.||
RBAM_021920__ 728 GGCGGCTTGAAAAACAGAGAAATCGGTCGGAATATGTGCTGCGCCTGTTG 777
BSNT_03537___ 781 ---GATGAAAAGCCGATGACCGCTTTTCAGGTCTGTCAGCAGCTTTTTCC 827
||.|||| |..||||.|||||.|||||.||.|.||.|||.|||||
RBAM_021920__ 778 TCAGAGGAAA---CACTGACGGCTTTCCAGGTATGCCGGCGGCTGTTTCC 824
BSNT_03537___ 828 TGCTGTATATGAAAAGGAATTGTTTTTAACGATGTCAGAAACGGCAGGTC 877
.|||||.||||||||.|||||||||||||||||||||||||||...||.|
RBAM_021920__ 825 GGCTGTGTATGAAAATGAATTGTTTTTAACGATGTCAGAAACGATCGGCC 874
BSNT_03537___ 878 ACCTTGATGTGTTGGAGGCTGAA--GAAGCC---ATCACGTCATATTGGG 922
|.|||||.|||.|||..||.||| ||||.| |||...|||....|||
RBAM_021920__ 875 ATCTTGACGTGCTGGCCGCCGAAGGGAAGGCTGTATCCTTTCAGTCGGGG 924
BSNT_03537___ 923 AAGGAAATACCGCA-----TACTTTAAAACAATGAAGAGGTGA 960
|| || .|.||||||.|..|||||.|||||
RBAM_021920__ 925 AA----------CACTCTGAAGTTTAAAGCTGTGAAGGGGTGA 957
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