Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03535 and RBAM_021900

See Amino acid alignment / Visit BSNT_03535 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:47
# Commandline: needle
#    -asequence dna-align/BSNT_03535___dsdA.1.9828.seq
#    -bsequence dna-align/RBAM_021900___dsdA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03535___dsdA-RBAM_021900___dsdA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03535___dsdA-RBAM_021900___dsdA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03535___dsdA
# 2: RBAM_021900___dsdA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1454
# Identity:     952/1454 (65.5%)
# Similarity:   952/1454 (65.5%)
# Gaps:         211/1454 (14.5%)
# Score: 3055.5
# 
#
#=======================================

BSNT_03535___      1 ATGTCAGTTCATTCAGAAGTCCTTCATGCTCTGCTTAAAGATCCGTTTAT     50
                                     |.||||                 ||.|.|..|||
RBAM_021900__      1 ----------------ATGTCC-----------------GACCGGGATAT     17

BSNT_03535___     51 ACAGAAACTG--ATTGAT-GCAGAGCCTGTATTCTGGGCAAAT-------     90
                     |||.||   |  |||||| |||||||||.||.|| .|||||||       
RBAM_021900__     18 ACACAA---GGCATTGATGGCAGAGCCTCTAGTC-AGGCAAATGGCGGAG     63

BSNT_03535___     91 -------------------TCA---GGCAAGAAA--GAGGGGCCATTACC    116
                                        |||   .|||..|||  ||.|..|||.||..
RBAM_021900__     64 GCGCGTGAAGTATTTTGGATCAATCCGCATAAAACCGATGATCCAGTAAA    113

BSNT_03535___    117 CCGTGCAGATGAGTGGGCAACCGAGATAGCGGAAGCGGAAAAAAGAATGC    166
                     .|.||..|.|||.|||..||..|||||.||.|||||||||.||||..|||
RBAM_021900__    114 GCATGGCGCTGAATGGAAAAAGGAGATTGCCGAAGCGGAAGAAAGGCTGC    163

BSNT_03535___    167 GGCGGTTTGCACCTTACATTGCCGAGGTGTTTCCTGAGACGAAAG----G    212
                     |.||||||||.|||||.||.||...||..|||||.||||||.|||    |
RBAM_021900__    164 GCCGGTTTGCGCCTTATATCGCGTCGGCTTTTCCGGAGACGGAAGCGGAG    213

BSNT_03535___    213 CGCTAAAGGAATCATCGAATCTCCGCT--TTTTGAGGTTCAGCATATGAA    260
                     .|    |||..||||.|||||||||||  |.||||  ||.|..|.|||||
RBAM_021900__    214 GG----AGGCCTCATTGAATCTCCGCTTGTCTTGA--TTAATGAAATGAA    257

BSNT_03535___    261 GGAAAAGCTGGAA------GCGGCATATCAGCAGCCATTT--CCGGGAAG    302
                     |.|..|.||||||      ||.||   ||||  ||  |||  ||||| .|
RBAM_021900__    258 GAAGCATCTGGAACACAGCGCCGC---TCAG--GC--TTTCCCCGGG-CG    299

BSNT_03535___    303 ATGGCTTTTAAAGTGCGACCATGAGCTTCCGATTTCAGGATCGATTAAAG    352
                     ...||||||.||.||||||.|.||.|||||||||||.||.||.|||||||
RBAM_021900__    300 TCTGCTTTTGAAATGCGACGACGAACTTCCGATTTCCGGTTCCATTAAAG    349

BSNT_03535___    353 CGAGGGGCGGGATTTATGAAGTGTTAAAGCATGCTGAAAATCTCGCGCTT    402
                     ||.|.|||||||||||.||||||.|.||||.|||.|||.||||||||.|.
RBAM_021900__    350 CGCGCGGCGGGATTTACGAAGTGCTGAAGCTTGCCGAAGATCTCGCGGTA    399

BSNT_03535___    403 CAAGAAGGAATGCT-TCGGGAAACCGATGATTACCGCATCTT-ACAGGAA    450
                     .|||..|||||||| ||.|.|.| |||.||||||.||||.|| || .|||
RBAM_021900__    400 AAAGCGGGAATGCTCTCAGCAGA-CGACGATTACAGCATATTGAC-TGAA    447

BSNT_03535___    451 GAGCGGTTTACCGGGTTTTTCTCCCGCTATTCGATTGCTGTCGGTTCGAC    500
                     ||.||||||||||..||||||||....||.||.||.||.|||||.||.||
RBAM_021900__    448 GAACGGTTTACCGCTTTTTTCTCAAAATACTCTATAGCCGTCGGCTCTAC    497

BSNT_03535___    501 AGGAAATCTGGGTTTAAGCATCGGCATCATCGGCGCGGCACTCGGCTTTC    550
                     .||.|||.|.||..|.||.||||||||.|||||||||...|||||||||.
RBAM_021900__    498 GGGCAATTTAGGCCTGAGTATCGGCATAATCGGCGCGAAGCTCGGCTTTT    547

BSNT_03535___    551 GCGTGACAGTGCATATGTCCGCCGATGCTAAGCAGTGGAAAAAGGATCTC    600
                     |.|||||.||.|||||||||...||.||.|||||||||||||||||.||.
RBAM_021900__    548 GTGTGACCGTTCATATGTCCAGTGACGCAAAGCAGTGGAAAAAGGAGCTG    597

BSNT_03535___    601 CTCCGCCAAAAGGGAG-TCACTGTTATGGAGTACGAAACAGATTACAGCG    649
                     |||||..|||||||.| ||.| ||.||.||.||.|||.||||.|||||..
RBAM_021900__    598 CTCCGGGAAAAGGGGGTTCGC-GTCATCGAATATGAAGCAGACTACAGTC    646

BSNT_03535___    650 AAGCGGTGAACGAGGGGAGACGGCAGGCGGAACAAGATCCATTCTGTTAT    699
                     ..||.||.||.||||||.|...|||||||.|.||.||.||.|..||||||
RBAM_021900__    647 TGGCTGTCAAAGAGGGGCGCATGCAGGCGAAGCAGGACCCTTATTGTTAT    696

BSNT_03535___    700 TTTATTGATGATGAACATTCTCGTCAGCTGTTCTTAGGATATGCTGTTGC    749
                     ||||||||||||||.|||||.||..|.|||||.||.||.|||||.|||||
RBAM_021900__    697 TTTATTGATGATGAGCATTCCCGGGATCTGTTTTTGGGGTATGCCGTTGC    746

BSNT_03535___    750 CGCAAGCCGATTAAAAACACAGCTTGACTGTATGAATATACAGCCAAGTC    799
                     .|.||||||..|.||||..|||||.||....|||||.|||.||||     
RBAM_021900__    747 GGGAAGCCGTGTGAAAAAGCAGCTCGATCAAATGAACATAAAGCC-----    791

BSNT_03535___    800 TTGA-------GACGCCCTTGTTTGTGTATCTGCCGTGCGGAGTCGGCGG    842
                      |||       ||..|.||| ||.||.|||.||||.|||||.|||||.||
RBAM_021900__    792 -TGATGCAGATGAACCGCTT-TTCGTTTATTTGCCATGCGGGGTCGGAGG    839

BSNT_03535___    843 AGGACCGGGCGGTGTAGCATTTGGGCTGAAGCT--TCTATACGGAGATGA    890
                     |||.||||||||.||.||..|||.|||.|||||  |||||  ||.||..|
RBAM_021900__    840 AGGCCCGGGCGGCGTCGCGCTTGCGCTAAAGCTGATCTAT--GGCGAGCA    887

BSNT_03535___    891 TGTTCATGTGTTTTTCGCAGAACCAACTCATTCACCTTGTATGCTGTTAG    940
                     |||.|||.|.|||||||..||.||.||.||||||||.|||||||||||||
RBAM_021900__    888 TGTCCATATTTTTTTCGGTGAGCCGACGCATTCACCGTGTATGCTGTTAG    937

BSNT_03535___    941 GGCTTTATTCAGGACTT-CACGA--GAAGATCTCCGTCCAGGATATCGGC    987
                     |.||.|.|||.|| ||| ||.||  ||  |||..|||.|||||||||||.
RBAM_021900__    938 GACTGTTTTCCGG-CTTGCATGACGGA--ATCAGCGTGCAGGATATCGGT    984

BSNT_03535___    988 CTGGATAATCAGACTGCTGCTGACGGACTTGCCGTAGGGAGGCCGTCAGG   1037
                     ||.||||||||.||.||.||.||||||||.||.||.||.||||||||.||
RBAM_021900__    985 CTTGATAATCAAACGGCCGCCGACGGACTCGCGGTGGGAAGGCCGTCCGG   1034

BSNT_03535___   1038 ATTTGTCGGCAAGCTGATTGAACCGCTTCTGAGCGGCTGTTATACGGTAG   1087
                     |.|.|.||||...|||||.|||||..|.||.|||||.||||||||.|..|
RBAM_021900__   1035 ACTGGCCGGCCCTCTGATGGAACCTATACTAAGCGGTTGTTATACCGCCG   1084

BSNT_03535___   1088 AGGACAATACGCTTTATACTTTGCTTCAT--AT-----GCTGGCTGTATC   1130
                     |.|||...|||||||.|.|..|||||.||  ||     || |||.|    
RBAM_021900__   1085 ATGACGGCACGCTTTTTTCGCTGCTTTATCAATTAAGGGC-GGCCG----   1129

BSNT_03535___   1131 TGAAGATAAATATTTAGAG-------CCCTCTGCTCTTGCCGGCATGTTC   1173
                        ||   ||||   ||||       ||||||||.||.|||||..||..|
RBAM_021900__   1130 ---AG---AATA---AGAGCCTTGAACCCTCTGCACTCGCCGGACTGGCC   1170

BSNT_03535___   1174 GG-GCCG--------GTTCAGCTTTTTTCGACAGAAGAGGGAAGGCGCTA   1214
                     || ||||        |||||         |||.||||..||||..||.||
RBAM_021900__   1171 GGAGCCGTCAAGGTCGTTCA---------GACCGAAGCCGGAAACCGTTA   1211

BSNT_03535___   1215 TGGTCAGAAATA--------------TAAGATGGAACATGCCGTACATGT   1250
                     |        |||              |.||||||||.|||||||.||..|
RBAM_021900__   1212 T--------ATAAAAGAGCGGGGGCTTGAGATGGAAAATGCCGTGCACCT   1253

BSNT_03535___   1251 CGTCTGGGGAACGGGAGGAAGCATGGTTCCAAAAGATGAAATGGCTGCGT   1300
                     .||.|||.|.||.||.||||||||||||||..|.||.|||||||..|.||
RBAM_021900__   1254 TGTGTGGAGCACCGGCGGAAGCATGGTTCCGGAGGAGGAAATGGAAGAGT   1303

BSNT_03535___   1301 ATAACCGAATTGG-TGCTGATTTGCTAAAAAAACG------AAATGAAAA   1343
                     |.|.|||.||.|| |.||.||||...|||||||.|      .|.|||   
RBAM_021900__   1304 ACAGCCGGATCGGTTCCTCATTTTTGAAAAAAATGGGCAGACAGTGA---   1350

BSNT_03535___   1344 ATAA   1347
                         
RBAM_021900__   1350 ----   1350


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