Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03535 and RBAM_021900
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:47
# Commandline: needle
# -asequence dna-align/BSNT_03535___dsdA.1.9828.seq
# -bsequence dna-align/RBAM_021900___dsdA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03535___dsdA-RBAM_021900___dsdA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03535___dsdA-RBAM_021900___dsdA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03535___dsdA
# 2: RBAM_021900___dsdA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1454
# Identity: 952/1454 (65.5%)
# Similarity: 952/1454 (65.5%)
# Gaps: 211/1454 (14.5%)
# Score: 3055.5
#
#
#=======================================
BSNT_03535___ 1 ATGTCAGTTCATTCAGAAGTCCTTCATGCTCTGCTTAAAGATCCGTTTAT 50
|.|||| ||.|.|..|||
RBAM_021900__ 1 ----------------ATGTCC-----------------GACCGGGATAT 17
BSNT_03535___ 51 ACAGAAACTG--ATTGAT-GCAGAGCCTGTATTCTGGGCAAAT------- 90
|||.|| | |||||| |||||||||.||.|| .|||||||
RBAM_021900__ 18 ACACAA---GGCATTGATGGCAGAGCCTCTAGTC-AGGCAAATGGCGGAG 63
BSNT_03535___ 91 -------------------TCA---GGCAAGAAA--GAGGGGCCATTACC 116
||| .|||..||| ||.|..|||.||..
RBAM_021900__ 64 GCGCGTGAAGTATTTTGGATCAATCCGCATAAAACCGATGATCCAGTAAA 113
BSNT_03535___ 117 CCGTGCAGATGAGTGGGCAACCGAGATAGCGGAAGCGGAAAAAAGAATGC 166
.|.||..|.|||.|||..||..|||||.||.|||||||||.||||..|||
RBAM_021900__ 114 GCATGGCGCTGAATGGAAAAAGGAGATTGCCGAAGCGGAAGAAAGGCTGC 163
BSNT_03535___ 167 GGCGGTTTGCACCTTACATTGCCGAGGTGTTTCCTGAGACGAAAG----G 212
|.||||||||.|||||.||.||...||..|||||.||||||.||| |
RBAM_021900__ 164 GCCGGTTTGCGCCTTATATCGCGTCGGCTTTTCCGGAGACGGAAGCGGAG 213
BSNT_03535___ 213 CGCTAAAGGAATCATCGAATCTCCGCT--TTTTGAGGTTCAGCATATGAA 260
.| |||..||||.||||||||||| |.|||| ||.|..|.|||||
RBAM_021900__ 214 GG----AGGCCTCATTGAATCTCCGCTTGTCTTGA--TTAATGAAATGAA 257
BSNT_03535___ 261 GGAAAAGCTGGAA------GCGGCATATCAGCAGCCATTT--CCGGGAAG 302
|.|..|.|||||| ||.|| |||| || ||| ||||| .|
RBAM_021900__ 258 GAAGCATCTGGAACACAGCGCCGC---TCAG--GC--TTTCCCCGGG-CG 299
BSNT_03535___ 303 ATGGCTTTTAAAGTGCGACCATGAGCTTCCGATTTCAGGATCGATTAAAG 352
...||||||.||.||||||.|.||.|||||||||||.||.||.|||||||
RBAM_021900__ 300 TCTGCTTTTGAAATGCGACGACGAACTTCCGATTTCCGGTTCCATTAAAG 349
BSNT_03535___ 353 CGAGGGGCGGGATTTATGAAGTGTTAAAGCATGCTGAAAATCTCGCGCTT 402
||.|.|||||||||||.||||||.|.||||.|||.|||.||||||||.|.
RBAM_021900__ 350 CGCGCGGCGGGATTTACGAAGTGCTGAAGCTTGCCGAAGATCTCGCGGTA 399
BSNT_03535___ 403 CAAGAAGGAATGCT-TCGGGAAACCGATGATTACCGCATCTT-ACAGGAA 450
.|||..|||||||| ||.|.|.| |||.||||||.||||.|| || .|||
RBAM_021900__ 400 AAAGCGGGAATGCTCTCAGCAGA-CGACGATTACAGCATATTGAC-TGAA 447
BSNT_03535___ 451 GAGCGGTTTACCGGGTTTTTCTCCCGCTATTCGATTGCTGTCGGTTCGAC 500
||.||||||||||..||||||||....||.||.||.||.|||||.||.||
RBAM_021900__ 448 GAACGGTTTACCGCTTTTTTCTCAAAATACTCTATAGCCGTCGGCTCTAC 497
BSNT_03535___ 501 AGGAAATCTGGGTTTAAGCATCGGCATCATCGGCGCGGCACTCGGCTTTC 550
.||.|||.|.||..|.||.||||||||.|||||||||...|||||||||.
RBAM_021900__ 498 GGGCAATTTAGGCCTGAGTATCGGCATAATCGGCGCGAAGCTCGGCTTTT 547
BSNT_03535___ 551 GCGTGACAGTGCATATGTCCGCCGATGCTAAGCAGTGGAAAAAGGATCTC 600
|.|||||.||.|||||||||...||.||.|||||||||||||||||.||.
RBAM_021900__ 548 GTGTGACCGTTCATATGTCCAGTGACGCAAAGCAGTGGAAAAAGGAGCTG 597
BSNT_03535___ 601 CTCCGCCAAAAGGGAG-TCACTGTTATGGAGTACGAAACAGATTACAGCG 649
|||||..|||||||.| ||.| ||.||.||.||.|||.||||.|||||..
RBAM_021900__ 598 CTCCGGGAAAAGGGGGTTCGC-GTCATCGAATATGAAGCAGACTACAGTC 646
BSNT_03535___ 650 AAGCGGTGAACGAGGGGAGACGGCAGGCGGAACAAGATCCATTCTGTTAT 699
..||.||.||.||||||.|...|||||||.|.||.||.||.|..||||||
RBAM_021900__ 647 TGGCTGTCAAAGAGGGGCGCATGCAGGCGAAGCAGGACCCTTATTGTTAT 696
BSNT_03535___ 700 TTTATTGATGATGAACATTCTCGTCAGCTGTTCTTAGGATATGCTGTTGC 749
||||||||||||||.|||||.||..|.|||||.||.||.|||||.|||||
RBAM_021900__ 697 TTTATTGATGATGAGCATTCCCGGGATCTGTTTTTGGGGTATGCCGTTGC 746
BSNT_03535___ 750 CGCAAGCCGATTAAAAACACAGCTTGACTGTATGAATATACAGCCAAGTC 799
.|.||||||..|.||||..|||||.||....|||||.|||.||||
RBAM_021900__ 747 GGGAAGCCGTGTGAAAAAGCAGCTCGATCAAATGAACATAAAGCC----- 791
BSNT_03535___ 800 TTGA-------GACGCCCTTGTTTGTGTATCTGCCGTGCGGAGTCGGCGG 842
||| ||..|.||| ||.||.|||.||||.|||||.|||||.||
RBAM_021900__ 792 -TGATGCAGATGAACCGCTT-TTCGTTTATTTGCCATGCGGGGTCGGAGG 839
BSNT_03535___ 843 AGGACCGGGCGGTGTAGCATTTGGGCTGAAGCT--TCTATACGGAGATGA 890
|||.||||||||.||.||..|||.|||.||||| ||||| ||.||..|
RBAM_021900__ 840 AGGCCCGGGCGGCGTCGCGCTTGCGCTAAAGCTGATCTAT--GGCGAGCA 887
BSNT_03535___ 891 TGTTCATGTGTTTTTCGCAGAACCAACTCATTCACCTTGTATGCTGTTAG 940
|||.|||.|.|||||||..||.||.||.||||||||.|||||||||||||
RBAM_021900__ 888 TGTCCATATTTTTTTCGGTGAGCCGACGCATTCACCGTGTATGCTGTTAG 937
BSNT_03535___ 941 GGCTTTATTCAGGACTT-CACGA--GAAGATCTCCGTCCAGGATATCGGC 987
|.||.|.|||.|| ||| ||.|| || |||..|||.|||||||||||.
RBAM_021900__ 938 GACTGTTTTCCGG-CTTGCATGACGGA--ATCAGCGTGCAGGATATCGGT 984
BSNT_03535___ 988 CTGGATAATCAGACTGCTGCTGACGGACTTGCCGTAGGGAGGCCGTCAGG 1037
||.||||||||.||.||.||.||||||||.||.||.||.||||||||.||
RBAM_021900__ 985 CTTGATAATCAAACGGCCGCCGACGGACTCGCGGTGGGAAGGCCGTCCGG 1034
BSNT_03535___ 1038 ATTTGTCGGCAAGCTGATTGAACCGCTTCTGAGCGGCTGTTATACGGTAG 1087
|.|.|.||||...|||||.|||||..|.||.|||||.||||||||.|..|
RBAM_021900__ 1035 ACTGGCCGGCCCTCTGATGGAACCTATACTAAGCGGTTGTTATACCGCCG 1084
BSNT_03535___ 1088 AGGACAATACGCTTTATACTTTGCTTCAT--AT-----GCTGGCTGTATC 1130
|.|||...|||||||.|.|..|||||.|| || || |||.|
RBAM_021900__ 1085 ATGACGGCACGCTTTTTTCGCTGCTTTATCAATTAAGGGC-GGCCG---- 1129
BSNT_03535___ 1131 TGAAGATAAATATTTAGAG-------CCCTCTGCTCTTGCCGGCATGTTC 1173
|| |||| |||| ||||||||.||.|||||..||..|
RBAM_021900__ 1130 ---AG---AATA---AGAGCCTTGAACCCTCTGCACTCGCCGGACTGGCC 1170
BSNT_03535___ 1174 GG-GCCG--------GTTCAGCTTTTTTCGACAGAAGAGGGAAGGCGCTA 1214
|| |||| ||||| |||.||||..||||..||.||
RBAM_021900__ 1171 GGAGCCGTCAAGGTCGTTCA---------GACCGAAGCCGGAAACCGTTA 1211
BSNT_03535___ 1215 TGGTCAGAAATA--------------TAAGATGGAACATGCCGTACATGT 1250
| ||| |.||||||||.|||||||.||..|
RBAM_021900__ 1212 T--------ATAAAAGAGCGGGGGCTTGAGATGGAAAATGCCGTGCACCT 1253
BSNT_03535___ 1251 CGTCTGGGGAACGGGAGGAAGCATGGTTCCAAAAGATGAAATGGCTGCGT 1300
.||.|||.|.||.||.||||||||||||||..|.||.|||||||..|.||
RBAM_021900__ 1254 TGTGTGGAGCACCGGCGGAAGCATGGTTCCGGAGGAGGAAATGGAAGAGT 1303
BSNT_03535___ 1301 ATAACCGAATTGG-TGCTGATTTGCTAAAAAAACG------AAATGAAAA 1343
|.|.|||.||.|| |.||.||||...|||||||.| .|.|||
RBAM_021900__ 1304 ACAGCCGGATCGGTTCCTCATTTTTGAAAAAAATGGGCAGACAGTGA--- 1350
BSNT_03535___ 1344 ATAA 1347
RBAM_021900__ 1350 ---- 1350
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