Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03527 and RBAM_021830
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:47
# Commandline: needle
# -asequence dna-align/BSNT_03527___yqjW.1.9828.seq
# -bsequence dna-align/RBAM_021830___yqjW.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03527___yqjW-RBAM_021830___yqjW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03527___yqjW-RBAM_021830___yqjW.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03527___yqjW
# 2: RBAM_021830___yqjW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1332
# Identity: 839/1332 (63.0%)
# Similarity: 839/1332 (63.0%)
# Gaps: 201/1332 (15.1%)
# Score: 2527.5
#
#
#=======================================
BSNT_03527___ 1 ATGAAAGAAAAAGTGATTTTTCTCGTTGACATGCAATCGTTTTATGCATC 50
|||...|| .|||.||||.||.||.|||||||||||||||||.||
RBAM_021830__ 1 ATGGCTGA------TATTCTTCTTGTAGATATGCAATCGTTTTATGCGTC 44
BSNT_03527___ 51 TGTAGAGAAAGCGGAAAATCCACATTTGAAAAATAGGCCCGTCATTGTTT 100
|||.||.|||||||||...||.|||.|.||||...|||||||.|||||.|
RBAM_021830__ 45 TGTGGAAAAAGCGGAAGCGCCTCATCTCAAAAGCCGGCCCGTGATTGTCT 94
BSNT_03527___ 101 CGGGTGACCCTGAAAAAAGGGGCGGAGTGGTATTGGCTGCCTGCCCGCTG 150
||||.||.||.||||.|.|..||||.||.||..|.||.||.||.|||||.
RBAM_021830__ 95 CGGGAGATCCCGAAAGACGCAGCGGCGTCGTGCTTGCGGCTTGTCCGCTC 144
BSNT_03527___ 151 GCGAAACAAAAAGGTGTGGTGAATGCTTCACGGCTGTGGGAGGCGCAGGA 200
||.||||.|.|.||.||....|||||...||||||||||||.|||||||.
RBAM_021830__ 145 GCCAAACGATACGGCGTAAAAAATGCCGAACGGCTGTGGGAAGCGCAGGC 194
BSNT_03527___ 201 AAAGTGTCCTGAGGCTGTTGTGCTCCGGCCGCGTATGCAGCGGTATATTG 250
.||.|||||.||.||.|||.|..||||.|||||.||||||||||||||||
RBAM_021830__ 195 CAAATGTCCCGATGCCGTTATTGTCCGTCCGCGGATGCAGCGGTATATTG 244
BSNT_03527___ 251 ATGTATCACTGCA-AATTACGGCCATTCTCGAGGAGTATACAGACCTTGT 299
||||||| |..|| .|||||.|...|..|.||...||||||.||.|||||
RBAM_021830__ 245 ATGTATC-CGTCATGATTACCGAACTGTTTGAACGGTATACCGATCTTGT 293
BSNT_03527___ 300 GGAGCCTTATTCCATCGATGAACAGTTCATGGACATTACAGGCAGCCAGA 349
.||.||.||.|||||||||||.|||||..|.|||.|.||.||.|||..|.
RBAM_021830__ 294 AGAACCCTACTCCATCGATGAGCAGTTTCTCGACGTGACCGGAAGCAGGC 343
BSNT_03527___ 350 AGCTGTTTGGGACGCCGATGGAGATC-----------GCGAAAAGCATTC 388
.|||||| .||.|||| ||.||||||||||
RBAM_021830__ 344 GGCTGTT-----------CGGTGATCCTTTTACAATTGCCAAAAGCATTC 382
BSNT_03527___ 389 AGGGCAGA---ATCATGCGGGAGATCGGCGTTTATGCGCGGGTCGGAATC 435
| ||| | ||.|||||.||..|||||.|||||||.||.|||||.|||
RBAM_021830__ 383 A--GCA-AGCGATTATGCGTGAATTCGGCATTTATGCCCGTGTCGGCATC 429
BSNT_03527___ 436 GGCCCTAACAAAGCGCTGGCCAAAATTGCGTGTGACAATTTTGCCAAAAA 485
||.||.||.||.|||||..|.|||||.||.||.|||.|||||||||||||
RBAM_021830__ 430 GGGCCGAATAAGGCGCTCTCGAAAATGGCTTGCGACCATTTTGCCAAAAA 479
BSNT_03527___ 486 GAATAAAAACGGTATTTTTACCTTAACGAAAGA-----------AAATAT 524
.||...|..|||.|| |.|.||| ||||||
RBAM_021830__ 480 AAACGCATCCGGCAT-----------CCACAGATTGGATATGTCAAATAT 518
BSNT_03527___ 525 GAAAACCGAAATGTGGCCGCTCCCGGTGGGCAGCATGTTTGGCGTCGGGA 574
.|.....||..||||||||||.|||||.||.|...|.||.|||.||||.|
RBAM_021830__ 519 CAGGCAGGATCTGTGGCCGCTGCCGGTCGGAAAATTATTCGGCATCGGAA 568
BSNT_03527___ 575 GCCGCATGAAGCATCATTTAAATCGAATGGGCATCAGCACGATCGGCGGG 624
..||.|||.||||||||||||..||.||||||||||||||.|||||||||
RBAM_021830__ 569 AACGGATGGAGCATCATTTAAGACGGATGGGCATCAGCACAATCGGCGGG 618
BSNT_03527___ 625 CTCGCGG-----CTTTTCCGCTCGATCTTTTAAAAAAGAAATGGGGCATT 669
||.||.| | |||| |||..|..|.|||||....|||||||||
RBAM_021830__ 619 CTTGCCGGACACC----CCGC-CGAATTGCTGAAAAAACGCTGGGGCATT 663
BSNT_03527___ 670 AACGGCCACGTGCTGTGGATGACGGCAAACGGAATCGACTATTCC----C 715
||||||.|..||||...|..|||.||...|||.||||| ||| |
RBAM_021830__ 664 AACGGCGAATTGCTTCAGCGGACAGCCCGCGGCATCGA----TCCCTCTC 709
BSNT_03527___ 716 CTGT----GTCAACTTCGTCTCTGGACG-------GGCAAAAGGCGATAG 754
|.|| |||||| ||| |||||||.|||||.|
RBAM_021830__ 710 CGGTCACCGTCAAC-----------ACGCACAGCCGGCAAAAAGCGATCG 748
BSNT_03527___ 755 GCCATGGAATGACTCTCCCGAGAGACTACGAACACTTTGACAAAGAAATC 804
|||||...|||||.|||||||||||||||...|.||||| |.||.|||
RBAM_021830__ 749 GCCATAACATGACCCTCCCGAGAGACTACAGCCGCTTTG---AGGATATC 795
BSNT_03527___ 805 AAGGTCGTATTGCTTGAGCTGAGTGAAGAGGTGTGCAGGCGAAGCCGAAA 854
||.|||||..||||.|||.|.||.|||||.||| |||
RBAM_021830__ 796 AAAGTCGTGCTGCTGGAGTTAAGCGAAGAAGTG----------GCC---- 831
BSNT_03527___ 855 CGCCGGG---GT-----------CATGGGGCAGACAGTGTCAGTGAGCTG 890
|||||.| || |||.||.||.||.||.||.||.|||..
RBAM_021830__ 832 CGCCGCGCCCGTTTCAAACAATACATCGGCCATACGGTTTCGGTCAGCAT 881
BSNT_03527___ 891 CCGGGGTGCTGATTTTG-ATTGGCCGACGGGCTTCA-------ACCGGCA 932
|.|.||.|||||||||| ||| || ||||| ||.|.||
RBAM_021830__ 882 CAGAGGCGCTGATTTTGAATT--CC------CTTCAGATTTTCACAGACA 923
BSNT_03527___ 933 -AGTGAAGCTGGCAGAGCCGACTAATTCTACGCAGGATGTATATGAGGCT 981
|| .|||||||.....|||||||||| .|.|.|||.|||| .|
RBAM_021830__ 924 GAG-AAAGCTGGTGTCTCCGACTAATT----TCGGAATGGATAT----TT 964
BSNT_03527___ 982 GTACGCCGGCTGT----TTCTT------ACATTTTGGGACGGGAAACCTG 1021
.||...||||.|| .|||| .|| ||||.||||..|.||.|
RBAM_021830__ 965 TTAAAACGGCGGTCAAGCTCTTCAAAGAGCA--TTGGAACGGTGAGCCCG 1012
BSNT_03527___ 1022 TCCGCCGTCTCGGTGTCAATCTGTCTCAGCT-----CTCATCTGATGACA 1066
|||||.|...|||.|||...||.||.||||| || |.||||
RBAM_021830__ 1013 TCCGCAGCGCCGGCGTCTCCCTTTCCCAGCTGGAGCCT--TGTGAT---- 1056
BSNT_03527___ 1067 TATG-GCAGCTCAATTTATT------TCAGGATTATGCAAAGAAAATGAG 1109
|||| .|||||.|...|.|| .||||| |||.||.||.||
RBAM_021830__ 1057 TATGTTCAGCTGAGCCTGTTCGATGCCCAGGA------AAAAAAGATCAG 1100
BSNT_03527___ 1110 CCTAGGCTATGTGATGGACGGCATTAAAAATCGATTCG-----GCGACAC 1154
.||.|||.|.||..||||.|..|||.|..|.||.|.|| |||.|.|
RBAM_021830__ 1101 TCTCGGCAAAGTATTGGATGATATTCATGAGCGGTACGGCCCTGCGTCGC 1150
BSNT_03527___ 1155 AGCAATCATCAGGGCGGCGTCACTGACAGCGGCAGGCCAGGCATTTGAAC 1204
||.||...||.||.||||||||||.|||.|||||.||.|||.|.|
RBAM_021830__ 1151 -----TCCTCCATGCCGCTTCACTGACAGAGGCCGGCCAAGCCTTTCACC 1195
BSNT_03527___ 1205 GCGCGGCTAAAATAGGGGGGCACTATAAATGA 1236
|.||.|..|||||.||.|||||.||.||||.|
RBAM_021830__ 1196 GGGCTGAAAAAATCGGCGGGCATTACAAATAA 1227
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