Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03527 and RBAM_021830

See Amino acid alignment / Visit BSNT_03527 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:47
# Commandline: needle
#    -asequence dna-align/BSNT_03527___yqjW.1.9828.seq
#    -bsequence dna-align/RBAM_021830___yqjW.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03527___yqjW-RBAM_021830___yqjW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03527___yqjW-RBAM_021830___yqjW.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03527___yqjW
# 2: RBAM_021830___yqjW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1332
# Identity:     839/1332 (63.0%)
# Similarity:   839/1332 (63.0%)
# Gaps:         201/1332 (15.1%)
# Score: 2527.5
# 
#
#=======================================

BSNT_03527___      1 ATGAAAGAAAAAGTGATTTTTCTCGTTGACATGCAATCGTTTTATGCATC     50
                     |||...||      .|||.||||.||.||.|||||||||||||||||.||
RBAM_021830__      1 ATGGCTGA------TATTCTTCTTGTAGATATGCAATCGTTTTATGCGTC     44

BSNT_03527___     51 TGTAGAGAAAGCGGAAAATCCACATTTGAAAAATAGGCCCGTCATTGTTT    100
                     |||.||.|||||||||...||.|||.|.||||...|||||||.|||||.|
RBAM_021830__     45 TGTGGAAAAAGCGGAAGCGCCTCATCTCAAAAGCCGGCCCGTGATTGTCT     94

BSNT_03527___    101 CGGGTGACCCTGAAAAAAGGGGCGGAGTGGTATTGGCTGCCTGCCCGCTG    150
                     ||||.||.||.||||.|.|..||||.||.||..|.||.||.||.|||||.
RBAM_021830__     95 CGGGAGATCCCGAAAGACGCAGCGGCGTCGTGCTTGCGGCTTGTCCGCTC    144

BSNT_03527___    151 GCGAAACAAAAAGGTGTGGTGAATGCTTCACGGCTGTGGGAGGCGCAGGA    200
                     ||.||||.|.|.||.||....|||||...||||||||||||.|||||||.
RBAM_021830__    145 GCCAAACGATACGGCGTAAAAAATGCCGAACGGCTGTGGGAAGCGCAGGC    194

BSNT_03527___    201 AAAGTGTCCTGAGGCTGTTGTGCTCCGGCCGCGTATGCAGCGGTATATTG    250
                     .||.|||||.||.||.|||.|..||||.|||||.||||||||||||||||
RBAM_021830__    195 CAAATGTCCCGATGCCGTTATTGTCCGTCCGCGGATGCAGCGGTATATTG    244

BSNT_03527___    251 ATGTATCACTGCA-AATTACGGCCATTCTCGAGGAGTATACAGACCTTGT    299
                     ||||||| |..|| .|||||.|...|..|.||...||||||.||.|||||
RBAM_021830__    245 ATGTATC-CGTCATGATTACCGAACTGTTTGAACGGTATACCGATCTTGT    293

BSNT_03527___    300 GGAGCCTTATTCCATCGATGAACAGTTCATGGACATTACAGGCAGCCAGA    349
                     .||.||.||.|||||||||||.|||||..|.|||.|.||.||.|||..|.
RBAM_021830__    294 AGAACCCTACTCCATCGATGAGCAGTTTCTCGACGTGACCGGAAGCAGGC    343

BSNT_03527___    350 AGCTGTTTGGGACGCCGATGGAGATC-----------GCGAAAAGCATTC    388
                     .||||||           .||.||||           ||.||||||||||
RBAM_021830__    344 GGCTGTT-----------CGGTGATCCTTTTACAATTGCCAAAAGCATTC    382

BSNT_03527___    389 AGGGCAGA---ATCATGCGGGAGATCGGCGTTTATGCGCGGGTCGGAATC    435
                     |  ||| |   ||.|||||.||..|||||.|||||||.||.|||||.|||
RBAM_021830__    383 A--GCA-AGCGATTATGCGTGAATTCGGCATTTATGCCCGTGTCGGCATC    429

BSNT_03527___    436 GGCCCTAACAAAGCGCTGGCCAAAATTGCGTGTGACAATTTTGCCAAAAA    485
                     ||.||.||.||.|||||..|.|||||.||.||.|||.|||||||||||||
RBAM_021830__    430 GGGCCGAATAAGGCGCTCTCGAAAATGGCTTGCGACCATTTTGCCAAAAA    479

BSNT_03527___    486 GAATAAAAACGGTATTTTTACCTTAACGAAAGA-----------AAATAT    524
                     .||...|..|||.||           |.|.|||           ||||||
RBAM_021830__    480 AAACGCATCCGGCAT-----------CCACAGATTGGATATGTCAAATAT    518

BSNT_03527___    525 GAAAACCGAAATGTGGCCGCTCCCGGTGGGCAGCATGTTTGGCGTCGGGA    574
                     .|.....||..||||||||||.|||||.||.|...|.||.|||.||||.|
RBAM_021830__    519 CAGGCAGGATCTGTGGCCGCTGCCGGTCGGAAAATTATTCGGCATCGGAA    568

BSNT_03527___    575 GCCGCATGAAGCATCATTTAAATCGAATGGGCATCAGCACGATCGGCGGG    624
                     ..||.|||.||||||||||||..||.||||||||||||||.|||||||||
RBAM_021830__    569 AACGGATGGAGCATCATTTAAGACGGATGGGCATCAGCACAATCGGCGGG    618

BSNT_03527___    625 CTCGCGG-----CTTTTCCGCTCGATCTTTTAAAAAAGAAATGGGGCATT    669
                     ||.||.|     |    |||| |||..|..|.|||||....|||||||||
RBAM_021830__    619 CTTGCCGGACACC----CCGC-CGAATTGCTGAAAAAACGCTGGGGCATT    663

BSNT_03527___    670 AACGGCCACGTGCTGTGGATGACGGCAAACGGAATCGACTATTCC----C    715
                     ||||||.|..||||...|..|||.||...|||.|||||    |||    |
RBAM_021830__    664 AACGGCGAATTGCTTCAGCGGACAGCCCGCGGCATCGA----TCCCTCTC    709

BSNT_03527___    716 CTGT----GTCAACTTCGTCTCTGGACG-------GGCAAAAGGCGATAG    754
                     |.||    ||||||           |||       |||||||.|||||.|
RBAM_021830__    710 CGGTCACCGTCAAC-----------ACGCACAGCCGGCAAAAAGCGATCG    748

BSNT_03527___    755 GCCATGGAATGACTCTCCCGAGAGACTACGAACACTTTGACAAAGAAATC    804
                     |||||...|||||.|||||||||||||||...|.|||||   |.||.|||
RBAM_021830__    749 GCCATAACATGACCCTCCCGAGAGACTACAGCCGCTTTG---AGGATATC    795

BSNT_03527___    805 AAGGTCGTATTGCTTGAGCTGAGTGAAGAGGTGTGCAGGCGAAGCCGAAA    854
                     ||.|||||..||||.|||.|.||.|||||.|||          |||    
RBAM_021830__    796 AAAGTCGTGCTGCTGGAGTTAAGCGAAGAAGTG----------GCC----    831

BSNT_03527___    855 CGCCGGG---GT-----------CATGGGGCAGACAGTGTCAGTGAGCTG    890
                     |||||.|   ||           |||.||.||.||.||.||.||.|||..
RBAM_021830__    832 CGCCGCGCCCGTTTCAAACAATACATCGGCCATACGGTTTCGGTCAGCAT    881

BSNT_03527___    891 CCGGGGTGCTGATTTTG-ATTGGCCGACGGGCTTCA-------ACCGGCA    932
                     |.|.||.|||||||||| |||  ||      |||||       ||.|.||
RBAM_021830__    882 CAGAGGCGCTGATTTTGAATT--CC------CTTCAGATTTTCACAGACA    923

BSNT_03527___    933 -AGTGAAGCTGGCAGAGCCGACTAATTCTACGCAGGATGTATATGAGGCT    981
                      || .|||||||.....||||||||||    .|.|.|||.||||    .|
RBAM_021830__    924 GAG-AAAGCTGGTGTCTCCGACTAATT----TCGGAATGGATAT----TT    964

BSNT_03527___    982 GTACGCCGGCTGT----TTCTT------ACATTTTGGGACGGGAAACCTG   1021
                     .||...||||.||    .||||      .||  ||||.||||..|.||.|
RBAM_021830__    965 TTAAAACGGCGGTCAAGCTCTTCAAAGAGCA--TTGGAACGGTGAGCCCG   1012

BSNT_03527___   1022 TCCGCCGTCTCGGTGTCAATCTGTCTCAGCT-----CTCATCTGATGACA   1066
                     |||||.|...|||.|||...||.||.|||||     ||  |.||||    
RBAM_021830__   1013 TCCGCAGCGCCGGCGTCTCCCTTTCCCAGCTGGAGCCT--TGTGAT----   1056

BSNT_03527___   1067 TATG-GCAGCTCAATTTATT------TCAGGATTATGCAAAGAAAATGAG   1109
                     |||| .|||||.|...|.||      .|||||      |||.||.||.||
RBAM_021830__   1057 TATGTTCAGCTGAGCCTGTTCGATGCCCAGGA------AAAAAAGATCAG   1100

BSNT_03527___   1110 CCTAGGCTATGTGATGGACGGCATTAAAAATCGATTCG-----GCGACAC   1154
                     .||.|||.|.||..||||.|..|||.|..|.||.|.||     |||.|.|
RBAM_021830__   1101 TCTCGGCAAAGTATTGGATGATATTCATGAGCGGTACGGCCCTGCGTCGC   1150

BSNT_03527___   1155 AGCAATCATCAGGGCGGCGTCACTGACAGCGGCAGGCCAGGCATTTGAAC   1204
                          ||.||...||.||.||||||||||.|||.|||||.||.|||.|.|
RBAM_021830__   1151 -----TCCTCCATGCCGCTTCACTGACAGAGGCCGGCCAAGCCTTTCACC   1195

BSNT_03527___   1205 GCGCGGCTAAAATAGGGGGGCACTATAAATGA   1236
                     |.||.|..|||||.||.|||||.||.||||.|
RBAM_021830__   1196 GGGCTGAAAAAATCGGCGGGCATTACAAATAA   1227


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