Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03518 and RBAM_021780

See Amino acid alignment / Visit BSNT_03518 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:46
# Commandline: needle
#    -asequence dna-align/BSNT_03518___yqkC.1.9828.seq
#    -bsequence dna-align/RBAM_021780___yqkC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03518___yqkC-RBAM_021780___yqkC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03518___yqkC-RBAM_021780___yqkC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03518___yqkC
# 2: RBAM_021780___yqkC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 241
# Identity:     192/241 (79.7%)
# Similarity:   192/241 (79.7%)
# Gaps:           2/241 ( 0.8%)
# Score: 752.0
# 
#
#=======================================

BSNT_03518___      1 GTGGAACAAAAGCTGAAGGCAATGAAGAACACAGCACAAAATAAAACGTG     50
                     |||.|.|||||||||||.||.||.||..|.||.|||||..||||||||||
RBAM_021780__      1 GTGAATCAAAAGCTGAAAGCCATTAAACAGACGGCACAGCATAAAACGTG     50

BSNT_03518___     51 GGTATCCTTCCTGAATCAA-AACCATCCTTATACCTTGCTTCACTGGTCA     99
                     |||||||||.||||| ||| |||||.||.||.|...||||.||||||||.
RBAM_021780__     51 GGTATCCTTTCTGAA-CAACAACCACCCGTACAGTCTGCTGCACTGGTCC     99

BSNT_03518___    100 ATCGGAGGAGCAGAGTCCATCAAGAAAGATGTCTGGCTATTGCAGGATGA    149
                     ||||||||.||.||.|||.|..||||.|||||||||||..|.||||||||
RBAM_021780__    100 ATCGGAGGCGCTGAATCCGTTCAGAAGGATGTCTGGCTGCTTCAGGATGA    149

BSNT_03518___    150 AATGACCTTCGAGACGCAGGAGTTTACAACGATAGATCTTGCGATTGAAT    199
                     .|||||||||.|..|||||||||||||.||.||.||.||.||.|||||.|
RBAM_021780__    150 GATGACCTTCAAAGCGCAGGAGTTTACGACAATCGACCTCGCCATTGATT    199

BSNT_03518___    200 GGATCAGAGAAAATATGGATGGCATTACCGACGTTCTGTAA    240
                     |||||.|||||||||||||.||.||||||||||||.|.|.|
RBAM_021780__    200 GGATCGGAGAAAATATGGACGGGATTACCGACGTTTTATGA    240


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