Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_03514 and RBAM_021760

See Amino acid alignment / Visit BSNT_03514 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:46
# Commandline: needle
#    -asequence dna-align/BSNT_03514___yqkE.1.9828.seq
#    -bsequence dna-align/RBAM_021760___yqkE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03514___yqkE-RBAM_021760___yqkE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03514___yqkE-RBAM_021760___yqkE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03514___yqkE
# 2: RBAM_021760___yqkE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 255
# Identity:     166/255 (65.1%)
# Similarity:   166/255 (65.1%)
# Gaps:          57/255 (22.4%)
# Score: 551.5
# 
#
#=======================================

BSNT_03514___      1 ---ATGAAAAAACAAAAACCCGCT-------GACAAACACCAGC-TAAAA     39
                        ||||||||.||       |||       ||.||||| |||| |||||
RBAM_021760__      1 ATGATGAAAAAGCA-------GCTGCCTAAAGAAAAACA-CAGCTTAAAA     42

BSNT_03514___     40 GACGGCCTTCAATC-------CGATATCAAAGCAAAGCTTATGGAGATGA     82
                     ||||       |||       .|||.|.||.||.|.||||.||.|.||||
RBAM_021760__     43 GACG-------ATCTGGAGGAAGATCTGAAGGCCAGGCTTTTGCAAATGA     85

BSNT_03514___     83 A----GAGCCAATTGAAGGAAGAGGATG----AAAAGAG--GCAGGAAAG    122
                     |    ||||    ||||||||||.||.|    ||||.||  ||||     
RBAM_021760__     86 AAAGTGAGC----TGAAGGAAGAAGACGAGAAAAAACAGGCGCAG-----    126

BSNT_03514___    123 AGAAAAAGCAGAACAGATCAGAAA--GAAAAGAGAGATCGAAAAAAATAA    170
                      .||||.||.|||||.||||||||  |||||||.|.|  ||||||.||||
RBAM_021760__    127 -CAAAAGGCGGAACAAATCAGAAAACGAAAAGAAAAA--GAAAAACATAA    173

BSNT_03514___    171 GAGCTTTGAAGAACTCCTAAATGAAAGCCAAATGGATTGGCATCAATATA    220
                     .|||||||||||.||.||.|||||||||....|.||||||||..||||||
RBAM_021760__    174 AAGCTTTGAAGAGCTGCTGAATGAAAGCAGTCTCGATTGGCACAAATATA    223

BSNT_03514___    221 AATAA    225
                     |||||
RBAM_021760__    224 AATAA    228


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.