Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03513 and RBAM_021750
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:46
# Commandline: needle
# -asequence dna-align/BSNT_03513___yqkF.1.9828.seq
# -bsequence dna-align/RBAM_021750___yqkF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03513___yqkF-RBAM_021750___yqkF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03513___yqkF-RBAM_021750___yqkF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03513___yqkF
# 2: RBAM_021750___yqkF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 941
# Identity: 708/941 (75.2%)
# Similarity: 708/941 (75.2%)
# Gaps: 40/941 ( 4.3%)
# Score: 2586.5
#
#
#=======================================
BSNT_03513___ 1 ATGAGAAAGCGCAAATTGGGTACA-TCTGATTTAGACATTAGTGAAGTCG 49
||||||||.||||.|.|||| ||| |||||||||||.||.||.|||.|||
RBAM_021750__ 1 ATGAGAAAACGCACACTGGG-ACATTCTGATTTAGAAATAAGCGAAATCG 49
BSNT_03513___ 50 GACTCGGCTGTATGTCTCTTGGAACTGAAAAAAACAAAGCATTGTCCATT 99
|.||||||||||||||.||.||.||.||.|||...|||||..||||.|||
RBAM_021750__ 50 GGCTCGGCTGTATGTCGCTGGGCACGGATAAAGCTAAAGCGCTGTCTATT 99
BSNT_03513___ 100 CTGGATGAAGCGATCGAGCTCGGCATCAACTATTTGGACACAGCGGATTT 149
.|||||||||||||||||||.||.|||||.|||||.||.||.||.|||.|
RBAM_021750__ 100 TTGGATGAAGCGATCGAGCTTGGAATCAATTATTTAGATACCGCTGATCT 149
BSNT_03513___ 150 GTATGACCGGGGACGCAACGAAGAAATGGTCGGTGATGCGATCCAAAACA 199
.|||||....||..|.||.||.|||||.|||||.||.||..||.|||||.
RBAM_021750__ 150 TTATGATTTCGGCAGAAATGAGGAAATTGTCGGGGAGGCCGTCAAAAACC 199
BSNT_03513___ 200 GACGCCAGGATATTATTCTGGCAACAAAAGCGGGAAACCGTTGGGATGAC 249
|..|.||.||.||.|||.|.||.||.|||||.||||||||.|||.||||.
RBAM_021750__ 200 GCAGGCACGACATCATTTTAGCCACGAAAGCCGGAAACCGCTGGAATGAT 249
BSNT_03513___ 250 GGAAGCGAGGGCTGGTATTGGGACCCTTCAAAAGCTTACATAAAAGAGGC 299
|..|..||.||||||.||||||||.||||.||||..|||||||||||.||
RBAM_021750__ 250 GATAAAGACGGCTGGCATTGGGACGCTTCCAAAGGATACATAAAAGAAGC 299
BSNT_03513___ 300 GGTAAAAAAGAGCCTTACACGTCTGAAAACAGATTATATCGACCTTTATC 349
|||.|||||.|||||....||.||||||||.||.||||||||||||||||
RBAM_021750__ 300 GGTCAAAAACAGCCTGCGCCGGCTGAAAACGGACTATATCGACCTTTATC 349
BSNT_03513___ 350 AGCTTCACGGCGGCACGATAGAGGACAACATTGATGAAACGATCGAAGCG 399
||||.||.|||||||||||.||.|||.|.|||||.||||||||||||||.
RBAM_021750__ 350 AGCTGCATGGCGGCACGATGGAAGACCATATTGACGAAACGATCGAAGCA 399
BSNT_03513___ 400 TTTGAGGAATTAAAACAAGAAGGTGTCATCCGCTACTACGGCATTTCTTC 449
|||||.||.||||||||.||||||||||||||.||.|||||||||||.||
RBAM_021750__ 400 TTTGAAGACTTAAAACAGGAAGGTGTCATCCGGTATTACGGCATTTCCTC 449
BSNT_03513___ 450 CATCCGCCCGAATGTGATTAAAGAATATGTGAAAAAATCAAACATCGTCA 499
.||.||.||||||||.||||||||||||||||||||||||||.|||..||
RBAM_021750__ 450 GATTCGTCCGAATGTTATTAAAGAATATGTGAAAAAATCAAATATCACCA 499
BSNT_03513___ 500 GCATTATGATGCAATTCAGCCTGTTTGACAGACGCCCTGAGGAATGGCTC 549
||.||||||||||||.|||||||.|.|||.|.||.||.|||||.|||||.
RBAM_021750__ 500 GCGTTATGATGCAATACAGCCTGCTGGACCGGCGTCCCGAGGAGTGGCTT 549
BSNT_03513___ 550 CCGCTTTTAGAGGAACATCAAATCAGCGTAGTCGCCAGAGGTCCTGTTGC 599
||.|||||||||||..|...|||||||||||||||.|||||.|||||.||
RBAM_021750__ 550 CCCCTTTTAGAGGAGAACGGAATCAGCGTAGTCGCAAGAGGGCCTGTCGC 599
BSNT_03513___ 600 CAAAGGAC-TCTTAACTGAAAAACCGCTTGATCAAGCTTCAGACAGCATG 648
.|||||.| |||| ||.||||||||||||||||||||..|.|..|||.|.
RBAM_021750__ 600 TAAAGGGCTTCTT-ACGGAAAAACCGCTTGATCAAGCGGCCGCAAGCGTA 648
BSNT_03513___ 649 AAACAAAACGGGTACTTGTCCTATTCATTCGAGGAACTG--ACAAATGCA 696
|||.|.|||||.||.||..|.|||||.||.|..|||||| |.|||
RBAM_021750__ 649 AAAGAGAACGGCTATTTAACATATTCTTTTGCAGAACTGGAAGAAA---- 694
BSNT_03513___ 697 CGCAAGGCAATGGAGGAAGTG------GCTCCCG-ATCTTTC-----CAT 734
.||| || |||.| |||.||| |.||..| |||
RBAM_021750__ 695 -CCAA---AA------AAGCGATCAGCGCTGCCGCACCTGACTTGAGCAT 734
BSNT_03513___ 735 GACAGAAAAGTCGCTGCAGTATCTGCTAGCACAGCCGGCTGTCGCTTCAG 784
|||.||....||.||.||.||..||||..||||||||||.||||||||.|
RBAM_021750__ 735 GACGGAGCTTTCTCTTCAATACTTGCTGTCACAGCCGGCCGTCGCTTCTG 784
BSNT_03513___ 785 TGATTACAGGCGCCAG-TAAGATTGAGCAGTTACGGGAAAA-TATTCAGG 832
|.||.||.||.||||| |.| .||||||||.|..|.||||| |.||| ||
RBAM_021750__ 785 TCATCACCGGAGCCAGCTCA-CTTGAGCAGCTGAGAGAAAACTGTTC-GG 832
BSNT_03513___ 833 CAGCAAATGCACGGCGTTTAACCGAAG--AGGAAATCAAAGCGCTCCAAT 880
|.|||.|.||..||||||||| |.|| |||||||||||||.||.||||
RBAM_021750__ 833 CTGCAGAGGCCAGGCGTTTAA--GCAGCCAGGAAATCAAAGCCCTGCAAT 880
BSNT_03513___ 881 CTCATACGAAACAAGACATTTACAAAACTCATCGCTCATAG 921
..|||||.||||..|||.|.|||.||.|.|||||.||.||.
RBAM_021750__ 881 ACCATACAAAACGGGACGTATACGAAGCCCATCGTTCTTAA 921
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