Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03494 and RBAM_021600

See Amino acid alignment / Visit BSNT_03494 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:44
# Commandline: needle
#    -asequence dna-align/BSNT_03494___punA.1.9828.seq
#    -bsequence dna-align/RBAM_021600___punA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03494___punA-RBAM_021600___punA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03494___punA-RBAM_021600___punA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03494___punA
# 2: RBAM_021600___punA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 826
# Identity:     636/826 (77.0%)
# Similarity:   636/826 (77.0%)
# Gaps:          17/826 ( 2.1%)
# Score: 2441.5
# 
#
#=======================================

BSNT_03494___      1 TTGAAGGACAGA--ATTGAACGCGCAGCCGCTTTTATTAAACAAAACCTG     48
                     |||||  |||.|  ||.|||||.||.||.||.|||||||||.||.||.||
RBAM_021600__      1 TTGAA--ACAAAAGATCGAACGTGCTGCTGCATTTATTAAAGAACACGTG     48

BSNT_03494___     49 CCGGAATCTCCGAAGATCGGCCTTATTTTAGGCTCAGGTCTTGGCATTTT     98
                     ...|||.|.||.||||||||.||.||||||||.|||||.||.|||.|.||
RBAM_021600__     49 AAAGAAACACCAAAGATCGGTCTGATTTTAGGGTCAGGGCTCGGCGTATT     98

BSNT_03494___     99 GGCGGACGAAATCGAAAATCCGGTCAAGCTGAAATATGAAGATATACCTG    148
                     |||.||.|||||.|||....|.||||||||.|.|||||||...||.||||
RBAM_021600__     99 GGCCGATGAAATTGAAGGAGCTGTCAAGCTTACATATGAAACGATCCCTG    148

BSNT_03494___    149 AATTCCCGGTATCTACTGTTGAAGGGCATGCCGGACAGCTTGTGCTTGGC    198
                     |.||.|||||.||.||.||.|||||.||||||||.|||||||||.|.||.
RBAM_021600__    149 ATTTTCCGGTCTCAACGGTAGAAGGCCATGCCGGCCAGCTTGTGATGGGA    198

BSNT_03494___    199 ACTCTTGAAGGAGTTTCCGTCATTGCAATGCAGGGCCGCTTTCATTTTTA    248
                     ||.||||||||.||....|||||.||.|||||||||||||||||||..||
RBAM_021600__    199 ACGCTTGAAGGTGTGCAGGTCATCGCGATGCAGGGCCGCTTTCATTACTA    248

BSNT_03494___    249 TGAAGGCTACTCAATGGAGAAAGTCACATTCCCTGTACGCGTGATGAAAG    298
                     ||||||||||||||||||..|.||||||||.||.||.|||||||||||.|
RBAM_021600__    249 TGAAGGCTACTCAATGGATCAGGTCACATTTCCCGTCCGCGTGATGAAGG    298

BSNT_03494___    299 CGCTCGGTGTGGAAGCGTTGATCGTGACAAATGCCGCAGGCGGTGTCAAC    348
                     |||||||.||.|||.|..|..|||||||.|||||.||.||||||.|||||
RBAM_021600__    299 CGCTCGGCGTTGAATCTCTCGTCGTGACGAATGCAGCCGGCGGTATCAAC    348

BSNT_03494___    349 ACTGAATTCCGTGCGGGAGACTTAATGATTATTACCGATCATATCAACTT    398
                     |||||||||||.||.||.||..|.|||||||||||.||.||.||||||||
RBAM_021600__    349 ACTGAATTCCGGGCCGGCGATCTGATGATTATTACAGACCACATCAACTT    398

BSNT_03494___    399 TATGGGAACAAACCCGTTAATCGGGCCAAACGAAGCAGATTTCGGCGCCA    448
                     ||.|||.||.|||||||||||||||||.||||||||.||.|||||..|.|
RBAM_021600__    399 TACGGGCACCAACCCGTTAATCGGGCCGAACGAAGCTGAATTCGGACCGA    448

BSNT_03494___    449 GATTTCCAGATATGTCTTCAGCCTATGACAAAGATCTGTCCAGCCTGGCT    498
                     ||||.||.||.|||||...|||||||||||||||.|||||..||.|||||
RBAM_021600__    449 GATTCCCGGACATGTCAGAAGCCTATGACAAAGAGCTGTCAGGCTTGGCT    498

BSNT_03494___    499 GAAAAGATTGCGAAAGACCTTAATATCCCAATTCAAAAAGGCGTGTACAC    548
                     |||||.|..||..|.||.||....||.||..||||||||||.|||||.||
RBAM_021600__    499 GAAAAAACGGCCGATGAGCTGGGCATTCCTGTTCAAAAAGGGGTGTATAC    548

BSNT_03494___    549 TGCTGTGACAGGACCTTCTTACGAAACACCGGCAGAAGTCCGTTTCTTAA    598
                     .|||||.||.||.||.|||||||||||.||.||.||.||.||.||.||||
RBAM_021600__    549 AGCTGTTACGGGGCCGTCTTACGAAACGCCTGCTGAGGTTCGGTTTTTAA    598

BSNT_03494___    599 GAACGATGGGCTCTGATGCAGTCGGCATGTCTACTGTTCCGGAAGTCATT    648
                     ||||||||||.|||||.||.|||||||||||.||.||.|||||||||||.
RBAM_021600__    599 GAACGATGGGTTCTGACGCTGTCGGCATGTCGACCGTGCCGGAAGTCATC    648

BSNT_03494___    649 GTAGCGAATCATGCGGGAATGCGGGTTCTTGGCATTTCCTGCATCTCTAA    698
                     ||.||.||.||.|||||.|||||.||.||.|||||.||.|||||.||.||
RBAM_021600__    649 GTCGCCAACCACGCGGGGATGCGCGTGCTCGGCATCTCATGCATTTCCAA    698

BSNT_03494___    699 CGCGGCAGCCGGAATTCTGGATCAGCCTTTAAGTCACGATGAAGTGATGG    748
                     ||||||.||.||.|||||.||.|||||.|||...||.||.|||||.||||
RBAM_021600__    699 CGCGGCGGCAGGTATTCTTGACCAGCCGTTATCCCATGAAGAAGTAATGG    748

BSNT_03494___    749 AAGTGACCGAAAAAGTAAAAGCTGGATTCTTAAAGCTTGTTAAAGCGATC    798
                     ||.||||.|||||||||||||..||.||.||.||||||||.|||||..|.
RBAM_021600__    749 AAATGACGGAAAAAGTAAAAGGCGGCTTTTTGAAGCTTGTAAAAGCCGTA    798

BSNT_03494___    799 GTCGCTCAGTACG--------AATAA    816
                     |||||     |||        |||||
RBAM_021600__    799 GTCGC-----ACGATCTCAAAAATAA    819


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