Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03487 and RBAM_021550
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:43
# Commandline: needle
# -asequence dna-align/BSNT_03487___spoVAA.1.9828.seq
# -bsequence dna-align/RBAM_021550___spoVAA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03487___spoVAA-RBAM_021550___spoVAA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03487___spoVAA-RBAM_021550___spoVAA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03487___spoVAA
# 2: RBAM_021550___spoVAA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 634
# Identity: 493/634 (77.8%)
# Similarity: 493/634 (77.8%)
# Gaps: 23/634 ( 3.6%)
# Score: 1926.0
#
#
#=======================================
BSNT_03487___ 1 ATGATGGAACGACGAATATTTATCCGGCTTCGCCACCGGGTGCTGGCACA 50
||||||.|||||||||||.||.|.|||||||||||.|||..|||.||
RBAM_021550__ 1 ---ATGGAAAGACGAATATTTCTCAGACTTCGCCACCGCGTGAAGGCTCA 47
BSNT_03487___ 51 TCCAGGGGATATTATTACCGTTGGAGATGCCGCGCAAATAGAAGGGCAGC 100
|.|.||.|||||.||.||..|.||.||.||||||||.||.|..||.||||
RBAM_021550__ 48 TACCGGAGATATCATCACAATCGGCGACGCCGCGCAGATTGCGGGACAGC 97
BSNT_03487___ 101 TTCAGCTGAAAAAGAAACTTTCGGCTATGCCGCTTTATCAGGTGAGCG-A 149
...||||||||||.|||||.|||||..|||||||.|||.||||.| || |
RBAM_021550__ 98 AAAAGCTGAAAAAAAAACTGTCGGCACTGCCGCTGTATAAGGTCA-CGAA 146
BSNT_03487___ 150 AAAAGATAAAAATATCGTAATTCTGGATATCATACAAGTCCTCAGAGCCA 199
||||||.|||||||||||..|.|||||.||.|||.||||.||.|.|.|||
RBAM_021550__ 147 AAAAGACAAAAATATCGTCGTGCTGGACATTATAAAAGTGCTGAAAACCA 196
BSNT_03487___ 200 TTCA------TTTACAAGATCCGACACTTGATGTTCAAACCGTAGGCGGA 243
|||| ||| |||..|.||||||||.||.|||||.|||||.
RBAM_021550__ 197 TTCATACCGCTTT------TCCCGCGCTTGATGTACAGACCGTCGGCGGC 240
BSNT_03487___ 244 GCAGAAACCATTGTTGAAATTCAATATC---GAAAGCGAAATTTATCAAC 290
||.|||||.||.||.|||||.||.||.| .||||| |..|.|||.|
RBAM_021550__ 241 GCTGAAACGATAGTGGAAATCCATTACCAGAAAAAGC---AGCTGTCAGC 287
BSNT_03487___ 291 GGTTCTATTTATCGGTGTCTGGCTGCTTCTGTTTATTGGATCGTGTCTTG 340
.|||.||||..|||||||||||||.||.||.|||||.||.||.|||||||
RBAM_021550__ 288 CGTTTTATTCGTCGGTGTCTGGCTCCTGCTTTTTATCGGTTCATGTCTTG 337
BSNT_03487___ 341 CCATCATGAACTTTCATGAGGATGTAAGCATGAGAGATGTTCATATCGCA 390
||||.|||||.||||||||.|||||.||.||||||||.|||||||||||.
RBAM_021550__ 338 CCATTATGAATTTTCATGAAGATGTCAGTATGAGAGAAGTTCATATCGCC 387
BSNT_03487___ 391 CTATATGAAATCATAACCGGAGAGAGGAATGACTATCCATATTTGCTTCA 440
.||||||||||||||||.||.||..|||||||.||.||.|||.|||||||
RBAM_021550__ 388 TTATATGAAATCATAACGGGCGAACGGAATGAATACCCGTATCTGCTTCA 437
BSNT_03487___ 441 AATCCCATACAGCATCGGTTTGGGACTGGGGATGATCGTGTTTTTTAACC 490
.||.||.|||||||||||..|.||.||.||.||||||||.||||||||.|
RBAM_021550__ 438 GATTCCGTACAGCATCGGCCTCGGTCTCGGTATGATCGTCTTTTTTAATC 487
BSNT_03487___ 491 ACATATTTAAAAAGCGCCTAAATGAAGAGCCCAGCCCGCTGGAGGTTGAG 540
||||.||.|||||.|||||.|||||||||||.|||||||||||.||.|||
RBAM_021550__ 488 ACATCTTCAAAAAACGCCTGAATGAAGAGCCAAGCCCGCTGGAAGTCGAG 537
BSNT_03487___ 541 ATGTTTAACTATCAGCTTGATCTCGATCAATATGTGGCCATGCATGAGAA 590
||||||||.||||||||||||||||||||.|||||.||.|||||.||.||
RBAM_021550__ 538 ATGTTTAATTATCAGCTTGATCTCGATCATTATGTCGCAATGCACGAAAA 587
BSNT_03487___ 591 TCAAGAAACCATAAAGGATCTGCATGATCGTTAG 624
|.||||.||.||.||.||||||||||||||||||
RBAM_021550__ 588 TGAAGAGACGATGAAAGATCTGCATGATCGTTAG 621
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