Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03486 and RBAM_021540

See Amino acid alignment / Visit BSNT_03486 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:43
# Commandline: needle
#    -asequence dna-align/BSNT_03486___spoVAB.1.9828.seq
#    -bsequence dna-align/RBAM_021540___spoVAB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03486___spoVAB-RBAM_021540___spoVAB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03486___spoVAB-RBAM_021540___spoVAB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03486___spoVAB
# 2: RBAM_021540___spoVAB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 427
# Identity:     329/427 (77.0%)
# Similarity:   329/427 (77.0%)
# Gaps:           2/427 ( 0.5%)
# Score: 1241.0
# 
#
#=======================================

BSNT_03486___      1 ATGATCGTTAGTGTATTGTTCATTATTTTTGTCGGGCTCGGCGGAGGCAT     50
                     |||||||||||..|..|.|||.||||.|||||||||||.||||||||..|
RBAM_021540__      1 ATGATCGTTAGCATTCTTTTCGTTATGTTTGTCGGGCTTGGCGGAGGGCT     50

BSNT_03486___     51 AACGGTGGGGGCGGGTTTCGTTGCTTTTTTAACCGTAATGGGAATCATTC    100
                     .||.|||||.|||||.||.||.||||||||||||||.|||||||||||.|
RBAM_021540__     51 GACCGTGGGAGCGGGCTTTGTGGCTTTTTTAACCGTTATGGGAATCATCC    100

BSNT_03486___    101 CGCGGCTGATGCAGCTCACCAAAACAATGAGATTTGTTCAGGCTTATGAA    150
                     |.||.||.||||||||.||.|||||||||.|.|||||.|||||.||.|||
RBAM_021540__    101 CCCGCCTTATGCAGCTGACAAAAACAATGCGCTTTGTACAGGCCTACGAA    150

BSNT_03486___    151 GCGGCTGTCATTCTTGGCGCGGTTTGCGGGGGATGGGAGACGCTT-CATA    199
                     |..|||||.|||...||.||.||.|.|||.||.|||||.|| ||| .|||
RBAM_021540__    151 GGAGCTGTTATTTCAGGAGCTGTGTTCGGCGGCTGGGAAAC-CTTAAATA    199

BSNT_03486___    200 TGAATCATCTTTATCTAACAAAATGGATAGCTGTGCCGGTCGGGCTTCTG    249
                     ||||||||.|||.|.||.|..|||||.|.||.||.||||||||.|||.||
RBAM_021540__    200 TGAATCATTTTTTTTTATCTGAATGGCTGGCCGTTCCGGTCGGACTTTTG    249

BSNT_03486___    250 GCAGGTTTGTTCGTCGGGATGCTAGCGGCTGCTCTTACAGAAGTTTTAAA    299
                     ||.||..||||.|||||.|||||.||.||.||.|||||||||||..|.||
RBAM_021540__    250 GCCGGCATGTTTGTCGGCATGCTGGCCGCCGCGCTTACAGAAGTGCTGAA    299

BSNT_03486___    300 TGTCCTGCCGATTTTGGCGAAACGAATCGGGCTCAGAAGTAAAATCATTA    349
                     |||.||.||.|||.|.||.|||||.|||||..||.|.||.||||||||.|
RBAM_021540__    300 TGTGCTTCCCATTCTTGCCAAACGGATCGGCTTCGGCAGCAAAATCATCA    349

BSNT_03486___    350 TTTTATTAATGGCCATCGTGATTGGGAAAATCGCGGGATCTTTATTTCAC    399
                     |.||..|.||||||||.|||.|.||.||.||.||.||.|||||||||||.
RBAM_021540__    350 TATTGCTGATGGCCATTGTGTTCGGCAAGATAGCCGGCTCTTTATTTCAT    399

BSNT_03486___    400 TGGCTGTACTTTATTGACCATTCATAA    426
                     ||||||||.|||||..|.|||||||||
RBAM_021540__    400 TGGCTGTATTTTATCCATCATTCATAA    426


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