Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_03485 and RBAM_021530

See Amino acid alignment / Visit BSNT_03485 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:43
# Commandline: needle
#    -asequence dna-align/BSNT_03485___spoVAC.1.9828.seq
#    -bsequence dna-align/RBAM_021530___spoVAC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03485___spoVAC-RBAM_021530___spoVAC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03485___spoVAC-RBAM_021530___spoVAC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03485___spoVAC
# 2: RBAM_021530___spoVAC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 454
# Identity:     361/454 (79.5%)
# Similarity:   361/454 (79.5%)
# Gaps:           2/454 ( 0.4%)
# Score: 1421.0
# 
#
#=======================================

BSNT_03485___      1 ATGACAAACATAAAAGAAAATTACAAATCAAAAGTGAAA-ACATATCAGC     49
                     |||||||||.|||||||||||||||||.||||||||||| || |||||||
RBAM_021530__      1 ATGACAAACTTAAAAGAAAATTACAAAACAAAAGTGAAAGAC-TATCAGC     49

BSNT_03485___     50 CTAAGCCGCCTTACGTCTGGAACTGTGTAAAAGCCTTTTTAGTGGGCGGA     99
                     |.||.|||||.||.||.|||||.||.||.|||||||||.|..|.|||||.
RBAM_021530__     50 CGAAACCGCCATATGTTTGGAATTGCGTCAAAGCCTTTCTGATCGGCGGT     99

BSNT_03485___    100 CTGATTTGTGCAATCGGGCAAGGTCTGCAAAATTTTTATATCCATTTTTT    149
                     .||||.|||...||||||||.|.|||.|||.|.|||||.|||||.|||||
RBAM_021530__    100 TTGATCTGTCTGATCGGGCAGGCTCTTCAAGACTTTTACATCCACTTTTT    149

BSNT_03485___    150 TGATTTCAATGAAAAAACTGCGGGGAATCCAACAGCTGCAACGCTGATAT    199
                     |.||||.|||||||||||.|||||.||.||.||.||.||.||.||.||.|
RBAM_021530__    150 TAATTTTAATGAAAAAACAGCGGGCAACCCGACGGCCGCCACTCTTATTT    199

BSNT_03485___    200 TAATTTCTGCCCTGCTTACAGGGTTTGGCATCTATGACAGAATCGGACAA    249
                     |||||||.|||||..|.||.||.||.|||||.|||||||||.||||.||.
RBAM_021530__    200 TAATTTCGGCCCTTTTGACCGGATTCGGCATTTATGACAGACTCGGGCAG    249

BSNT_03485___    250 TTCGCAGGCGCAGGTTCAGCCGTACCTGTCACAGGTTTTGCCAACAGTAT    299
                     ||.||.||.||.|||||||||||.||.||.||.||||||||.||||||||
RBAM_021530__    250 TTTGCCGGAGCGGGTTCAGCCGTGCCGGTGACGGGTTTTGCAAACAGTAT    299

BSNT_03485___    300 GGCAAGCGCGGCTCTTGAATATAAAAGCGAAGGATTAGTGCTTGGAGTAG    349
                     |.|||||||.|||||.|||.|.|.|||.||||||.|.|||||.||.||||
RBAM_021530__    300 GACAAGCGCCGCTCTCGAACACAGAAGTGAAGGACTCGTGCTCGGGGTAG    349

BSNT_03485___    350 CGACAAATATGTTTAAACTGGCAGGAAATGTTATTGTTTTCGGAGTTGTA    399
                     |||||||.|||||||||.||||||||||.||.|||||.|||||.||.||.
RBAM_021530__    350 CGACAAACATGTTTAAATTGGCAGGAAACGTCATTGTATTCGGCGTCGTG    399

BSNT_03485___    400 GCTGCATACATCGTTGGAATGATTCGGTTTGCTTTTGAGAAACTGATGTC    449
                     ||.||.||.||.||.||..||||.||||||||||.|||.||||||.|.||
RBAM_021530__    400 GCAGCCTATATTGTAGGCCTGATACGGTTTGCTTGTGAAAAACTGTTTTC    449

BSNT_03485___    450 ATAG    453
                     .|||
RBAM_021530__    450 GTAG    453


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.