Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03483 and RBAM_021520

See Amino acid alignment / Visit BSNT_03483 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:43
# Commandline: needle
#    -asequence dna-align/BSNT_03483___spoVAD.1.9828.seq
#    -bsequence dna-align/RBAM_021520___spoVAD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03483___spoVAD-RBAM_021520___spoVAD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03483___spoVAD-RBAM_021520___spoVAD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03483___spoVAD
# 2: RBAM_021520___spoVAD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1022
# Identity:     782/1022 (76.5%)
# Similarity:   782/1022 (76.5%)
# Gaps:          10/1022 ( 1.0%)
# Score: 2909.0
# 
#
#=======================================

BSNT_03483___      1 ATGAAATTAACAGGAAAGCAAACCTGGGTATTTGAACATCCCATATTTGT     50
                     ||||||||.||.|||||||||||||||||.||||||.|.||..|||||||
RBAM_021520__      1 ATGAAATTGACCGGAAAGCAAACCTGGGTGTTTGAAAACCCGTTATTTGT     50

BSNT_03483___     51 CAACTCAGCGGGAACGGCAGCAGGACCAAAGGAAAAAGACGGACCGCTCG    100
                     .||..|.|||||.||||||||.|||||.||.|||||||||||.|||.|||
RBAM_021520__     51 AAATGCGGCGGGGACGGCAGCCGGACCGAAAGAAAAAGACGGCCCGATCG    100

BSNT_03483___    101 GCTCTTTATTTGATAAAACCTATGACGAAATGCATTGTAATCAAAAAAGC    150
                     |.||..|.||||||||.||.||.||.|||||||||||.|||||.||||.|
RBAM_021520__    101 GTTCGCTGTTTGATAAGACATACGATGAAATGCATTGCAATCAGAAAAAC    150

BSNT_03483___    151 TGGGAAATGGCGGAACGGCAGCTGATGGAAGACGCTGTTAATGTTGCGCT    200
                     |||||||||||||||||.|||.|.||||||||.||..|.||  .|.||||
RBAM_021520__    151 TGGGAAATGGCGGAACGTCAGTTAATGGAAGATGCCATCAA--CTCCGCT    198

BSNT_03483___    201 T--CAAAAAAACAATCTGACAAAAGA-TGATATTGACCTATTGCTGGCAG    247
                     |  ||||||.|.||..||| |||||| .||||||||..|.||.||.||.|
RBAM_021520__    199 TTGCAAAAACAGAACTTGA-AAAAGAGCGATATTGATTTGTTACTCGCGG    247

BSNT_03483___    248 GCGA-CTTGCTGAACCAAAACGTGACGGCTAACTATGTGGCAAGACACTT    296
                     |.|| ||| .|.||.|||||.|||||.||.|||||.||.||.|||||..|
RBAM_021520__    248 GGGATCTT-TTAAATCAAAATGTGACCGCCAACTACGTCGCCAGACATCT    296

BSNT_03483___    297 GAAAATCCCATTTCTTTGTATGTTTGGTGCCTGTTCAACATCAATGGAAA    346
                     ||||||.||.||.||.|||.||||.||.||||||||.|||||||||||||
RBAM_021520__    297 GAAAATTCCGTTCCTCTGTCTGTTCGGCGCCTGTTCGACATCAATGGAAA    346

BSNT_03483___    347 CAGTTGCTGTCGCATCAGC-CTTAGTTGATGGCGGGTTTGCCAAAAGGGC    395
                     |..|||||||||||||.|| ||.| ||||.|||||.|||||.||..||||
RBAM_021520__    347 CGATTGCTGTCGCATCTGCGCTCA-TTGACGGCGGTTTTGCGAACCGGGC    395

BSNT_03483___    396 ACTCGCTGCCACTAGCAGTCACAATGCAACTGCGGAAAGACAGTTTCGCT    445
                     ..||||.|||||.|||||.||.||.||.||.||.|||.|.||.||.|||.
RBAM_021520__    396 GATCGCAGCCACGAGCAGCCATAACGCGACGGCAGAACGGCAATTCCGCA    445

BSNT_03483___    446 ATCCGACAGAATACGGAGGCCAAAAACCGGACACTGCTACCTCCACTGTA    495
                     |||||||.||.||.||.||.|||||||||||.||.||.||.||.||.||.
RBAM_021520__    446 ATCCGACGGAGTATGGCGGGCAAAAACCGGATACCGCCACTTCAACGGTC    495

BSNT_03483___    496 ACCGGAAGCGGTGCAGTTGTCATCAGTCAGACACCGGGTGATATCCAAAT    545
                     ||.||..||||.||.||..|||||||.||.|..||...|||||||.|.||
RBAM_021520__    496 ACGGGGGGCGGGGCGGTCATCATCAGCCAAAACCCTTCTGATATCAAGAT    545

BSNT_03483___    546 CACAAGTGCGACTGTCGGAAAGGTTTCTGATTTAGGAATTACAGACCCTT    595
                     .|||||.||.||.||.|||||.||....||..|.|||||.|||||.||.|
RBAM_021520__    546 TACAAGCGCAACAGTAGGAAAAGTAAGCGACCTCGGAATAACAGATCCGT    595

BSNT_03483___    596 TTGATATGGGATCGGCTATGGCTCCGGCTGCAGCTGATACAATTAAGCAG    645
                     |.|||||||||||.||.|||||.||.|||||.||.||.|||||.||.|||
RBAM_021520__    596 TCGATATGGGATCCGCCATGGCGCCCGCTGCCGCCGACACAATCAAACAG    645

BSNT_03483___    646 CACTTTAAAGATCTCAACCGGACAGCGGATGATTATGATCTAATCCTGAC    695
                     |||.|..|.||..|.|||||.||.|||||||||||||||||.||..|.||
RBAM_021520__    646 CACCTGCAGGACTTGAACCGCACGGCGGATGATTATGATCTGATTTTAAC    695

BSNT_03483___    696 AGGTGACCTGTCAGGCGTCGGTTCTCCAATCGTAAAAGACATCTTAAAAG    745
                     .||.|||||.|||||||||||.||.||.|||||.|||||..|..|.||||
RBAM_021520__    696 GGGAGACCTTTCAGGCGTCGGCTCGCCGATCGTGAAAGATTTGCTCAAAG    745

BSNT_03483___    746 AAGATGGATATCCAGTCGGCACAAAGCATGATGATTGCGGGCTTCTGATT    795
                     ||||.||.|||||.||.||.||.||.||.|||||.|||||.|||||.||.
RBAM_021520__    746 AAGAAGGCTATCCCGTGGGAACGAAACACGATGACTGCGGTCTTCTCATC    795

BSNT_03483___    796 TACACTCCGGATCAGCAGGTCTTTGCCGGGGGGAGCGGCTGTGCTTGTTC    845
                     ||.||.|||||.||||||||.|||||.||.||.||||||||.||.||.||
RBAM_021520__    796 TATACGCCGGACCAGCAGGTGTTTGCGGGCGGAAGCGGCTGCGCCTGCTC    845

BSNT_03483___    846 AGCGGTTGTCACCTACTCTCATATTTTTAAGCAGCTGAGAGAAGGAAATT    895
                     .|||.||||.||.|||.|.|||||||||||.||..|.|.||..||.|.|.
RBAM_021520__    846 TGCGCTTGTTACGTACACACATATTTTTAATCAATTAAAAGCGGGGACTC    895

BSNT_03483___    896 TAAACCGTGTATTTGTCGTAGCGACCGGGGCACTATTAAGCCCGACGATG    945
                     |||||.|.|||.|.||.||.|||||.|||||.||.|||||.|||||.|||
RBAM_021520__    896 TAAACAGGGTACTCGTTGTCGCGACAGGGGCGCTTTTAAGTCCGACAATG    945

BSNT_03483___    946 ATCCAGCAAAAAGAAACCATCCCGACTATCGCCCACGGGGTTGTATTTGA    995
                     ||||||||.||.||||||||.|||||.|||||.|||||.||.||||||||
RBAM_021520__    946 ATCCAGCAGAAGGAAACCATTCCGACCATCGCGCACGGTGTGGTATTTGA    995

BSNT_03483___    996 GCGTGCAGGAGGTGCATCTTAA   1017
                     |||.||.|||||||||||.|||
RBAM_021520__    996 GCGGGCGGGAGGTGCATCATAA   1017


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