Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03479 and RBAM_021480
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:42
# Commandline: needle
# -asequence dna-align/BSNT_03479___lysA.1.9828.seq
# -bsequence dna-align/RBAM_021480___lysA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03479___lysA-RBAM_021480___lysA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03479___lysA-RBAM_021480___lysA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03479___lysA
# 2: RBAM_021480___lysA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1335
# Identity: 1046/1335 (78.4%)
# Similarity: 1046/1335 (78.4%)
# Gaps: 24/1335 ( 1.8%)
# Score: 4066.0
#
#
#=======================================
BSNT_03479___ 1 ATGACATTGTTCTTACACGGCACAAGCAGACAAAATCAACATGGTCATTT 50
|||||||||||.|||||||||||||||||..|||..||||||||
RBAM_021480__ 1 ------TTGTTCTTACATGGCACAAGCAGACAAAACAAACTAGGTCATTT 44
BSNT_03479___ 51 AGAAATCGGAGGTGTGGATGCTCTCTATTTAGCGGAGAAATATGGTACAC 100
.|||||||||||||||||.||.||.||||||||||||.|.||.||.||.|
RBAM_021480__ 45 GGAAATCGGAGGTGTGGACGCGCTGTATTTAGCGGAGCATTACGGCACGC 94
BSNT_03479___ 101 CTCTTTACGTATATGATGTGGCTTTAATACGTGAGCGTGCTAAAAGCTTT 150
|||||||.||.||.|||||||||||||||||||||||.||||||||||||
RBAM_021480__ 95 CTCTTTATGTTTACGATGTGGCTTTAATACGTGAGCGCGCTAAAAGCTTT 144
BSNT_03479___ 151 AAGCAGGCGTTTATTTTCGCAGGGCTGAAA-GCACAGGTGGCATATGCGA 199
||.|||||.||.|||..||| ||..|.||| ||.|||||.||.||.||||
RBAM_021480__ 145 AAACAGGCATTCATTGACGC-GGATTTAAAGGCGCAGGTCGCGTACGCGA 193
BSNT_03479___ 200 GCAAAGCATTCTCATCAGTTGCAATGATTCAGCTCGCTGAGGAAGAGGGA 249
||||.||.||.||.||.|||||.|||||.||||||||||||.|.|||||.
RBAM_021480__ 194 GCAAGGCGTTTTCTTCCGTTGCGATGATACAGCTCGCTGAGCAGGAGGGG 243
BSNT_03479___ 250 CTTTCTTTAGATGTTGTATCCGGAGGAGAGCTATATACGGCTGTTGCGGC 299
||.||.||.||.|||||||||||.||||||||.|.||||||.||||||||
RBAM_021480__ 244 CTCTCATTGGACGTTGTATCCGGCGGAGAGCTGTTTACGGCGGTTGCGGC 293
BSNT_03479___ 300 AGGCTTTCCGGCAGAACGCATCCACTTTCATGGAAACAATAAGAGCAGGG 349
.||.||||||||.||..|.||.||||||||.||.||.||.||.|||...|
RBAM_021480__ 294 CGGTTTTCCGGCTGACAGGATTCACTTTCACGGCAATAACAAAAGCGAAG 343
BSNT_03479___ 350 AAGAACTGCGCATGGCGCTTGAGCACCGCATCGGCTGCATTGTGGTGGAT 399
||||..||...||||||||.||.||.|..||||||||||||||.||.|||
RBAM_021480__ 344 AAGAGTTGAAAATGGCGCTCGATCATCAAATCGGCTGCATTGTCGTTGAT 393
BSNT_03479___ 400 AATTTCTATGAAATTGCGCTT-CTTGAAGACCTATGTAAAGAAACGGGTC 448
|||||.||||||||..| ||| ||.|..||.||.||.....||.|.||.|
RBAM_021480__ 394 AATTTTTATGAAATATC-CTTACTCGCGGAACTGTGCCGCAAATCAGGGC 442
BSNT_03479___ 449 ACTCCATCGATGTTCTTCTTCGGATCACGCCCGGAGTAGAAGCGCATACG 498
.|.|.||.|||||.|||||.||||||||.||.||.|||||.|||||||||
RBAM_021480__ 443 GCACAATGGATGTGCTTCTGCGGATCACTCCAGGGGTAGAGGCGCATACG 492
BSNT_03479___ 499 CATGACTACATTACAACGGGCCAGGAAGATTCAAAGTTTGGTTTCGACCT 548
|||||.||.|||||||||||.|||||||||||.||.||.|||||.||.||
RBAM_021480__ 493 CATGATTATATTACAACGGGACAGGAAGATTCCAAATTCGGTTTTGATCT 542
BSNT_03479___ 549 TCATAACGGACAAACTGAACGGGCCATCGAACAAGTATTACAATCGGAAC 598
.||||||||.||||..|||..|||.||.||||||||||||||.||.||.|
RBAM_021480__ 543 GCATAACGGGCAAATAGAAAAGGCGATTGAACAAGTATTACAGTCAGACC 592
BSNT_03479___ 599 ACATTCAGCTGCTGGGTGTCCATTGCCATATCGGATCGCAAATCTTTGAT 648
|.||.|..||.||.||.||.||.|||||.||||||||||||||.||||||
RBAM_021480__ 593 ATATCCGCCTTCTCGGCGTTCACTGCCACATCGGATCGCAAATTTTTGAT 642
BSNT_03479___ 649 ACGGCCGGTTTTGTGTTAGCAGCGGAAAAAATCTTCAAAAAACTAGACGA 698
|||||.||.||||||.|.||.||.||||||||||||..||||||..|.||
RBAM_021480__ 643 ACGGCGGGCTTTGTGCTGGCCGCAGAAAAAATCTTCGCAAAACTGAATGA 692
BSNT_03479___ 699 GTGGAGAGATTCATATTC--ATTTGTATCCAAGGTGCTGAATCTTGGAGG 746
.||||||||.|| |||| .|||||.||..|.|||||||||.|.||.||
RBAM_021480__ 693 ATGGAGAGAATC--ATTCGGCTTTGTCTCTGAAGTGCTGAATTTAGGGGG 740
BSNT_03479___ 747 AGGTTTCGGCATTCGTTATACGGAAGATGATGAACCGCTTCATGCCACTG 796
.||.||.|||||.||.||.|||||.||.||||||||.||||||.||.|.|
RBAM_021480__ 741 CGGCTTTGGCATCCGCTACACGGAGGAGGATGAACCCCTTCATCCCGCCG 790
BSNT_03479___ 797 AATACGTTGAAAAAATTATCGAAGCTGTGAAAGAAAATGCTTCCCGTTAC 846
..||.||.|||||||||||||||||.||.||||||||.||..|.|...||
RBAM_021480__ 791 TTTATGTGGAAAAAATTATCGAAGCGGTAAAAGAAAACGCAGCGCTGCAC 840
BSNT_03479___ 847 GGTTTTGACATCCCGGAAATTTGGATCGAACCGGGCCGTTCTCTCGTGGG 896
|.|||||||||.|||||.||.|||||.||||||||.||.||.|||||.||
RBAM_021480__ 841 GCTTTTGACATTCCGGAGATCTGGATTGAACCGGGACGCTCGCTCGTCGG 890
BSNT_03479___ 897 AGACGCAGGCACAACTCTTTATACGGTTGGCTCTCAAAAAGAAGTGCCGG 946
||||||.||.||.||.||||||||..|.||.||.||||||||||||||.|
RBAM_021480__ 891 AGACGCCGGAACGACGCTTTATACCATCGGTTCGCAAAAAGAAGTGCCCG 940
BSNT_03479___ 947 GTGTCCGCCAGTATGTGGCAGTAGACGGAGGCATGAACGACAATATTCGT 996
|...|||..|.||||..||.||.|||||.|||||||.|||.|||||.|||
RBAM_021480__ 941 GCACCCGTAAATATGCAGCGGTTGACGGGGGCATGAGCGATAATATCCGT 990
BSNT_03479___ 997 CCTGCGCTTTACCAAGCTAAATATGAAGCTG---CGGCAGCCAACAGGAT 1043
||||||||.||.||.||.|||||||||||.| ||||| |||||.||
RBAM_021480__ 991 CCTGCGCTGTATCAGGCGAAATATGAAGCCGTATCGGCA---AACAGAAT 1037
BSNT_03479___ 1044 CGGAGAAGCGCATGACAAAACGGTATCAATTGCCGGAAAGTGCTGTGAAA 1093
|||||||...||.||.|||||||||||.||.||.||.|||||||||||||
RBAM_021480__ 1038 CGGAGAACACCACGATAAAACGGTATCCATCGCGGGTAAGTGCTGTGAAA 1087
BSNT_03479___ 1094 GCGGAGATATGCTGATTTGGGATATTGACCTGCCGGAAGTAAAAGAAGGC 1143
||||.||||||||.|||||||||||.|||||.||||||||.|||||||||
RBAM_021480__ 1088 GCGGTGATATGCTCATTTGGGATATAGACCTTCCGGAAGTGAAAGAAGGC 1137
BSNT_03479___ 1144 GATCTTCTTGCCGTTTTTTGTACAGGCGCTTATGGATACAGCATGGCCAA 1193
||||||||.||||||||.||.||.||.||.||.||||||||||||||.||
RBAM_021480__ 1138 GATCTTCTCGCCGTTTTCTGCACGGGAGCATACGGATACAGCATGGCTAA 1187
BSNT_03479___ 1194 CAATTATAACCGTATTCCGAGACCCGCCGTTGTATTTGTCGAAAACGGTG 1243
|||.||.|||||.||||||.|.||||||||.||.|||||.|||.||||.|
RBAM_021480__ 1188 CAACTACAACCGCATTCCGCGTCCCGCCGTCGTTTTTGTGGAAGACGGCG 1237
BSNT_03479___ 1244 AGGCTCATTTAGTCGT--GAAGCGAGAAACATACGAGGATATTGTAAAAC 1291
|.||.|||.|.|||.| ||| |.|||||.||.||.||.||||||||||
RBAM_021480__ 1238 AAGCGCATCTTGTCATTAGAA--GGGAAACTTATGAAGACATTGTAAAAC 1285
BSNT_03479___ 1292 TTGATCTGCCATTTAAAACAGGTGTAAAGCAATAA 1326
|.||||||||.|||||.||.||.||.||.||||||
RBAM_021480__ 1286 TGGATCTGCCGTTTAAGACGGGGGTCAAACAATAA 1320
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