Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_03479 and RBAM_021480

See Amino acid alignment / Visit BSNT_03479 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:42
# Commandline: needle
#    -asequence dna-align/BSNT_03479___lysA.1.9828.seq
#    -bsequence dna-align/RBAM_021480___lysA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03479___lysA-RBAM_021480___lysA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03479___lysA-RBAM_021480___lysA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03479___lysA
# 2: RBAM_021480___lysA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1335
# Identity:    1046/1335 (78.4%)
# Similarity:  1046/1335 (78.4%)
# Gaps:          24/1335 ( 1.8%)
# Score: 4066.0
# 
#
#=======================================

BSNT_03479___      1 ATGACATTGTTCTTACACGGCACAAGCAGACAAAATCAACATGGTCATTT     50
                           |||||||||||.|||||||||||||||||..|||..||||||||
RBAM_021480__      1 ------TTGTTCTTACATGGCACAAGCAGACAAAACAAACTAGGTCATTT     44

BSNT_03479___     51 AGAAATCGGAGGTGTGGATGCTCTCTATTTAGCGGAGAAATATGGTACAC    100
                     .|||||||||||||||||.||.||.||||||||||||.|.||.||.||.|
RBAM_021480__     45 GGAAATCGGAGGTGTGGACGCGCTGTATTTAGCGGAGCATTACGGCACGC     94

BSNT_03479___    101 CTCTTTACGTATATGATGTGGCTTTAATACGTGAGCGTGCTAAAAGCTTT    150
                     |||||||.||.||.|||||||||||||||||||||||.||||||||||||
RBAM_021480__     95 CTCTTTATGTTTACGATGTGGCTTTAATACGTGAGCGCGCTAAAAGCTTT    144

BSNT_03479___    151 AAGCAGGCGTTTATTTTCGCAGGGCTGAAA-GCACAGGTGGCATATGCGA    199
                     ||.|||||.||.|||..||| ||..|.||| ||.|||||.||.||.||||
RBAM_021480__    145 AAACAGGCATTCATTGACGC-GGATTTAAAGGCGCAGGTCGCGTACGCGA    193

BSNT_03479___    200 GCAAAGCATTCTCATCAGTTGCAATGATTCAGCTCGCTGAGGAAGAGGGA    249
                     ||||.||.||.||.||.|||||.|||||.||||||||||||.|.|||||.
RBAM_021480__    194 GCAAGGCGTTTTCTTCCGTTGCGATGATACAGCTCGCTGAGCAGGAGGGG    243

BSNT_03479___    250 CTTTCTTTAGATGTTGTATCCGGAGGAGAGCTATATACGGCTGTTGCGGC    299
                     ||.||.||.||.|||||||||||.||||||||.|.||||||.||||||||
RBAM_021480__    244 CTCTCATTGGACGTTGTATCCGGCGGAGAGCTGTTTACGGCGGTTGCGGC    293

BSNT_03479___    300 AGGCTTTCCGGCAGAACGCATCCACTTTCATGGAAACAATAAGAGCAGGG    349
                     .||.||||||||.||..|.||.||||||||.||.||.||.||.|||...|
RBAM_021480__    294 CGGTTTTCCGGCTGACAGGATTCACTTTCACGGCAATAACAAAAGCGAAG    343

BSNT_03479___    350 AAGAACTGCGCATGGCGCTTGAGCACCGCATCGGCTGCATTGTGGTGGAT    399
                     ||||..||...||||||||.||.||.|..||||||||||||||.||.|||
RBAM_021480__    344 AAGAGTTGAAAATGGCGCTCGATCATCAAATCGGCTGCATTGTCGTTGAT    393

BSNT_03479___    400 AATTTCTATGAAATTGCGCTT-CTTGAAGACCTATGTAAAGAAACGGGTC    448
                     |||||.||||||||..| ||| ||.|..||.||.||.....||.|.||.|
RBAM_021480__    394 AATTTTTATGAAATATC-CTTACTCGCGGAACTGTGCCGCAAATCAGGGC    442

BSNT_03479___    449 ACTCCATCGATGTTCTTCTTCGGATCACGCCCGGAGTAGAAGCGCATACG    498
                     .|.|.||.|||||.|||||.||||||||.||.||.|||||.|||||||||
RBAM_021480__    443 GCACAATGGATGTGCTTCTGCGGATCACTCCAGGGGTAGAGGCGCATACG    492

BSNT_03479___    499 CATGACTACATTACAACGGGCCAGGAAGATTCAAAGTTTGGTTTCGACCT    548
                     |||||.||.|||||||||||.|||||||||||.||.||.|||||.||.||
RBAM_021480__    493 CATGATTATATTACAACGGGACAGGAAGATTCCAAATTCGGTTTTGATCT    542

BSNT_03479___    549 TCATAACGGACAAACTGAACGGGCCATCGAACAAGTATTACAATCGGAAC    598
                     .||||||||.||||..|||..|||.||.||||||||||||||.||.||.|
RBAM_021480__    543 GCATAACGGGCAAATAGAAAAGGCGATTGAACAAGTATTACAGTCAGACC    592

BSNT_03479___    599 ACATTCAGCTGCTGGGTGTCCATTGCCATATCGGATCGCAAATCTTTGAT    648
                     |.||.|..||.||.||.||.||.|||||.||||||||||||||.||||||
RBAM_021480__    593 ATATCCGCCTTCTCGGCGTTCACTGCCACATCGGATCGCAAATTTTTGAT    642

BSNT_03479___    649 ACGGCCGGTTTTGTGTTAGCAGCGGAAAAAATCTTCAAAAAACTAGACGA    698
                     |||||.||.||||||.|.||.||.||||||||||||..||||||..|.||
RBAM_021480__    643 ACGGCGGGCTTTGTGCTGGCCGCAGAAAAAATCTTCGCAAAACTGAATGA    692

BSNT_03479___    699 GTGGAGAGATTCATATTC--ATTTGTATCCAAGGTGCTGAATCTTGGAGG    746
                     .||||||||.||  ||||  .|||||.||..|.|||||||||.|.||.||
RBAM_021480__    693 ATGGAGAGAATC--ATTCGGCTTTGTCTCTGAAGTGCTGAATTTAGGGGG    740

BSNT_03479___    747 AGGTTTCGGCATTCGTTATACGGAAGATGATGAACCGCTTCATGCCACTG    796
                     .||.||.|||||.||.||.|||||.||.||||||||.||||||.||.|.|
RBAM_021480__    741 CGGCTTTGGCATCCGCTACACGGAGGAGGATGAACCCCTTCATCCCGCCG    790

BSNT_03479___    797 AATACGTTGAAAAAATTATCGAAGCTGTGAAAGAAAATGCTTCCCGTTAC    846
                     ..||.||.|||||||||||||||||.||.||||||||.||..|.|...||
RBAM_021480__    791 TTTATGTGGAAAAAATTATCGAAGCGGTAAAAGAAAACGCAGCGCTGCAC    840

BSNT_03479___    847 GGTTTTGACATCCCGGAAATTTGGATCGAACCGGGCCGTTCTCTCGTGGG    896
                     |.|||||||||.|||||.||.|||||.||||||||.||.||.|||||.||
RBAM_021480__    841 GCTTTTGACATTCCGGAGATCTGGATTGAACCGGGACGCTCGCTCGTCGG    890

BSNT_03479___    897 AGACGCAGGCACAACTCTTTATACGGTTGGCTCTCAAAAAGAAGTGCCGG    946
                     ||||||.||.||.||.||||||||..|.||.||.||||||||||||||.|
RBAM_021480__    891 AGACGCCGGAACGACGCTTTATACCATCGGTTCGCAAAAAGAAGTGCCCG    940

BSNT_03479___    947 GTGTCCGCCAGTATGTGGCAGTAGACGGAGGCATGAACGACAATATTCGT    996
                     |...|||..|.||||..||.||.|||||.|||||||.|||.|||||.|||
RBAM_021480__    941 GCACCCGTAAATATGCAGCGGTTGACGGGGGCATGAGCGATAATATCCGT    990

BSNT_03479___    997 CCTGCGCTTTACCAAGCTAAATATGAAGCTG---CGGCAGCCAACAGGAT   1043
                     ||||||||.||.||.||.|||||||||||.|   |||||   |||||.||
RBAM_021480__    991 CCTGCGCTGTATCAGGCGAAATATGAAGCCGTATCGGCA---AACAGAAT   1037

BSNT_03479___   1044 CGGAGAAGCGCATGACAAAACGGTATCAATTGCCGGAAAGTGCTGTGAAA   1093
                     |||||||...||.||.|||||||||||.||.||.||.|||||||||||||
RBAM_021480__   1038 CGGAGAACACCACGATAAAACGGTATCCATCGCGGGTAAGTGCTGTGAAA   1087

BSNT_03479___   1094 GCGGAGATATGCTGATTTGGGATATTGACCTGCCGGAAGTAAAAGAAGGC   1143
                     ||||.||||||||.|||||||||||.|||||.||||||||.|||||||||
RBAM_021480__   1088 GCGGTGATATGCTCATTTGGGATATAGACCTTCCGGAAGTGAAAGAAGGC   1137

BSNT_03479___   1144 GATCTTCTTGCCGTTTTTTGTACAGGCGCTTATGGATACAGCATGGCCAA   1193
                     ||||||||.||||||||.||.||.||.||.||.||||||||||||||.||
RBAM_021480__   1138 GATCTTCTCGCCGTTTTCTGCACGGGAGCATACGGATACAGCATGGCTAA   1187

BSNT_03479___   1194 CAATTATAACCGTATTCCGAGACCCGCCGTTGTATTTGTCGAAAACGGTG   1243
                     |||.||.|||||.||||||.|.||||||||.||.|||||.|||.||||.|
RBAM_021480__   1188 CAACTACAACCGCATTCCGCGTCCCGCCGTCGTTTTTGTGGAAGACGGCG   1237

BSNT_03479___   1244 AGGCTCATTTAGTCGT--GAAGCGAGAAACATACGAGGATATTGTAAAAC   1291
                     |.||.|||.|.|||.|  |||  |.|||||.||.||.||.||||||||||
RBAM_021480__   1238 AAGCGCATCTTGTCATTAGAA--GGGAAACTTATGAAGACATTGTAAAAC   1285

BSNT_03479___   1292 TTGATCTGCCATTTAAAACAGGTGTAAAGCAATAA   1326
                     |.||||||||.|||||.||.||.||.||.||||||
RBAM_021480__   1286 TGGATCTGCCGTTTAAGACGGGGGTCAAACAATAA   1320


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.